Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38560 593 / 0 AtPERK8 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) AT1G26150 497 / 2e-166 ATPERK10 proline-rich extensin-like receptor kinase 10 (.1) AT1G68690 494 / 1e-165 AtPERK9 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) AT1G70460 445 / 8e-147 AtPERK13, RHS10 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1) AT1G10620 441 / 3e-145 AtPERK11 proline-rich extensin-like receptor kinase 11, Protein kinase superfamily protein (.1) AT1G23540 431 / 3e-141 IGI1, AtPERK12 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) AT3G24550 421 / 3e-138 ATPERK1 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) AT1G70450 399 / 3e-133 Protein kinase superfamily protein (.1) AT4G34440 409 / 4e-133 AtPERK5 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1) AT1G52290 402 / 1e-132 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034082 [exp] 785 / 0 AT5G38560 700 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Lus10017898 [exp] 475 / 4e-158 AT1G68690 631 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10035071 [exp] 451 / 1e-149 AT1G68690 570 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Lus10011098 [exp] 432 / 2e-142 AT3G24550 700 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10013014 [exp] 419 / 4e-140 AT1G23540 572 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10029151 [exp] 417 / 1e-139 AT1G23540 575 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Lus10023645 [exp] 424 / 7e-139 AT3G24550 691 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10043219 [exp] 420 / 5e-138 AT3G24550 688 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Lus10013013 [exp] 420 / 4e-136 AT1G70460 596 / 0.0 proline-rich extensin-like receptor kinase 13, root hair specific 10 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G110400 [exp] 653 / 0 AT5G38560 654 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.004G105200 [exp] 651 / 0 AT5G38560 650 / 0.0 proline-rich extensin-like receptor kinase 8, Protein kinase superfamily protein (.1) Potri.008G111600 [exp] 515 / 1e-173 AT1G68690 622 / 0.0 proline-rich extensin-like receptor kinase 9, Protein kinase superfamily protein (.1) Potri.010G132900 [exp] 515 / 4e-173 AT1G26150 605 / 0.0 proline-rich extensin-like receptor kinase 10 (.1) Potri.008G189700 [exp] 447 / 3e-147 AT1G23540 642 / 0.0 proline-rich extensin-like receptor kinase 12, INFLORESCENCE GROWTH INHIBITOR 1, proline-rich extensin like receptor kinase, Protein kinase superfamily protein (.1) Potri.018G081300 [exp] 427 / 3e-140 AT3G24550 629 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.005G124400 [exp] 417 / 3e-137 AT2G18470 597 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.001G183000 [exp] 401 / 1e-131 AT3G24550 560 / 0.0 proline-rich extensin-like receptor kinase 1, proline extensin-like receptor kinase 1 (.1) Potri.007G027000 [exp] 402 / 3e-131 AT2G18470 599 / 0.0 proline-rich extensin-like receptor kinase 4, roline-rich extensin-like receptor kinase 4 (.1) Potri.009G115200 [exp] 390 / 2e-126 AT4G34440 575 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10003066 pacid=23154535 polypeptide=Lus10003066 locus=Lus10003066.g ID=Lus10003066.BGIv1.0 annot-version=v1.0 ATGGATTCATCAACACCTGCGCCAGACTCATCTACTACATTGGCAACTCCACCATCTTCCTCCACCATTATCCCATCATTGCCATCTCTTCTATCACCTC CTTCAACCACTGCTTCTCCATCTCCAAGTACAAGCCAGCCTGATCAGACCACTGATCCTCCTGCCACTCCTGCAAATCCTACTTCCCCACCACCTCAATC TCCACCACCAGCAACTCCAGCTGCTGCTCCTCCTCCATCCCCTCCCTTATCACCACCTCCATCAGCAGCATCCCCACCTCCAACATCTCCACCAATTCCA ACCTCACCACCACCATCAGCTTCTATTGCCACCCCTCCTCCAGCTTCCATTTCTACTCCACCTCCAGTTCCAGTTCCAGATGTTTCACCTCCACCTCCAG CCCCTATTATCAGCTCTCCTCCTCCAGAGCCCTCCCCCACAACACCTGTTCTATCCCCTCCCCCACCTGAAACTGTAACCCCTTCACCACCACCTCCTTC CAATGACTCACCGTCACCGTCACCTCCTTCCAATGACTCACCATCCCCGCCACCTCCATCACAAGAAAACCCTCCTCGAGATTCTTTCCCGCCTCCTGCT GCTCCTCCCCCACCTACATCCACATTGCCTTCTCCACCTCCTGATGTGCCTGCCAATCCTATACTTTCTCCTCCGGGAGACTCTTCTTCACGTAATGGGA GCTCGTTTGCCGCTTCACCGTTGCCCTCTATTCCTACTGAGAAGCCAACAGCAAGGGAAACTGGTGGCACGACAAATGTTTCTGCGAATTCTGGATCTCC TGGTTCTAGGGGTGGTTCCAATAATGGAGCTGTGGCAGCTGGTGTTGTTGCTGGACTTGTGATAGCTGGTCTACTTGTGATGGCTGCCTGGTTTCTACAT AAACGGAAGAGGAGAAGGCGTGGTAACGAAGGCGTTGGATATACAATGCCTTCTCCTTTTGCATCTTCTCAAAACTCAGATGTAGTGTTTATACAGCAGC CTCATTCTTCTGGTCCACTGAAAGGAAGCCTTTCTGGCAGTGATTTCATGTATTCCCCATCGGAGTCTGGTGGGATGAACAATACGAGATCTTGGTTCAC CTATAACGAATTGAGCCAGGCTACGGATGGTTTCTCGAAACAGAATCTCTTGGGTGAAGGTGGATTTGGTTGTGTATATAAAGGCATTCTAGTAGATGGA AGAGAAGTAGCTGTAAAACAATTGAAAATAGGTGGTTCTCAGGGGGAACGTGAGTTTAGAGCAGAGGTAGAGATTATTAGCCGAGTACATCACCGCCATT TGGTTTCGTTGGTTGGTTACTGCATATCGGAGCATCAAAGACTGTTGATTTATGACTTCCTTCCCAACGATACGCTACATTATCATCTCCACACTGAAGG AAGGCCAGTCATGGATTGGGCATTACGAGTTAGAGTTGCAGCTGGCGCTGCTCGTGGGTTAGCCTACCTTCATGAAGACTGCCATCCCCGCATCATTCAC AGAGATATAAAGTCATCAAACATCCTTCTGGACAACAATTTTGAAGCTATGGTTGCAGATTTTGGGTTGGCGAAACTAGCTTTGGAACTGGATTCAAATA CGCACGTAAGCACCCGGGTGATGGGAACTTTCGGGTACATGGCTCCAGAATACGCAACCAGTGGAAAGTTGACAGAGAAGTCTGATGTCTATTCATTCGG GGTCGTGCTTCTAGAACTAATTACAGGCCGTAAACCTGTGGATCCTTCTCAGCCCCTCGGTGACGAGAGCCTGGTCGAGTGGGCTCGGCCATTGCTGACT GAAGCACTCGACAACGAGGACTTCGACCTGCTGAGTGACCCGAGGCTGGAAAAGAAGTATGTAGCTGCCGAAATGTTCAGAATGATGGAGGCTGCTGCAG CGTGTGTGCGGCATTCAGCTGTAAAGAGGCCTCGAATGAGTCAGGTGGCAAGAGCTTTGGATTCGGTAAACGAGCTGTCAGACTTATCGAATGGGATGAA ACCGGGGCAAAGTGAAATCTACGATTCAAGACAGCAGTCGGCGCAGATAAGGATGTTTCAGAGGATGGCATTTGGTAGTCAGGACTATAACAGTTCAGAG TATTTCAATCACAGTCAGAGTAGCTGGAGCAGTACTCGAGAGTACAGGGAGAGGGAGAGGAGCAATTCGTTCATACCGTGA
AA sequence Show only first row Show all	>Lus10003066 pacid=23154535 polypeptide=Lus10003066 locus=Lus10003066.g ID=Lus10003066.BGIv1.0 annot-version=v1.0 MDSSTPAPDSSTTLATPPSSSTIIPSLPSLLSPPSTTASPSPSTSQPDQTTDPPATPANPTSPPPQSPPPATPAAAPPPSPPLSPPPSAASPPPTSPPIP TSPPPSASIATPPPASISTPPPVPVPDVSPPPPAPIISSPPPEPSPTTPVLSPPPPETVTPSPPPPSNDSPSPSPPSNDSPSPPPPSQENPPRDSFPPPA APPPPTSTLPSPPPDVPANPILSPPGDSSSRNGSSFAASPLPSIPTEKPTARETGGTTNVSANSGSPGSRGGSNNGAVAAGVVAGLVIAGLLVMAAWFLH KRKRRRRGNEGVGYTMPSPFASSQNSDVVFIQQPHSSGPLKGSLSGSDFMYSPSESGGMNNTRSWFTYNELSQATDGFSKQNLLGEGGFGCVYKGILVDG REVAVKQLKIGGSQGEREFRAEVEIISRVHHRHLVSLVGYCISEHQRLLIYDFLPNDTLHYHLHTEGRPVMDWALRVRVAAGAARGLAYLHEDCHPRIIH RDIKSSNILLDNNFEAMVADFGLAKLALELDSNTHVSTRVMGTFGYMAPEYATSGKLTEKSDVYSFGVVLLELITGRKPVDPSQPLGDESLVEWARPLLT EALDNEDFDLLSDPRLEKKYVAAEMFRMMEAAAACVRHSAVKRPRMSQVARALDSVNELSDLSNGMKPGQSEIYDSRQQSAQIRMFQRMAFGSQDYNSSE YFNHSQSSWSSTREYRERERSNSFIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38560		AtPERK8	proline-rich extensin-like rec...		Lus10003066 [exp]	0	1
AT3G17430			Nucleotide-sugar transporter f...		Lus10018339 [exp]	2.6	0.7482
AT5G57330			Galactose mutarotase-like supe...		Lus10041629 [exp]	4.5	0.6545
					Lus10033375 [exp]	4.6	0.6388
AT3G08720		ATPK2, ATPK19, ...	ARABIDOPSIS THALIANA SERINE/TH...		Lus10014181 [exp]	5.3	0.6627
AT3G07700			Protein kinase superfamily pro...		Lus10012317 [exp]	15.4	0.6073
AT1G08660		MGP2	MALE GAMETOPHYTE DEFECTIVE 2 (...		Lus10031992 [exp]	15.9	0.6415
AT3G63460		EMB2221	transducin family protein / WD...		Lus10005322 [exp]	16.6	0.6599
AT5G65770		CRWN4, LINC4	CROWDED NUCLEI 4, little nucle...		Lus10019257 [exp]	23.6	0.5462
AT1G29395		COR413IM1, COR4...	cold regulated 414 thylakoid m...		Lus10004599 [exp]	27.0	0.5053
AT2G38650		GAUT7, LGT7	LIKE GLYCOSYL TRANSFERASE 7, g...		Lus10035615 [exp]	27.9	0.6164

Compare expression of checked genes

Lus10003066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.