Plant FIBer expression Database

Lus10003067 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G38600 307 / 2e-97 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1)
AT1G67210 296 / 1e-94 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1), Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034080
[exp]
734 / 0 AT5G38600 280 / 1e-86 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1)
Lus10018475
[exp]
43 / 0.0006 AT4G21660 756 / 0.0 proline-rich spliceosome-associated (PSP) family protein (.1), proline-rich spliceosome-associated (PSP) family protein (.2)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G104400
[exp]
426 / 9e-142 AT5G38600 404 / 3e-134 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1)
Potri.017G111300
[exp]
419 / 2e-139 AT5G38600 400 / 4e-133 Proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04046 PSP PSP
Representative CDS sequence
>Lus10003067 pacid=23154537 polypeptide=Lus10003067 locus=Lus10003067.g ID=Lus10003067.BGIv1.0 annot-version=v1.0
ATGGAGACTGAGGAGAACATTGGCACGCCTGCTGGCTGTGATTCTGAGGGCATAAAGCAGGATAATAATCCGGATTTACAGCCCAGTGTTGATGATTCTC
AATCGCATTTGGGAATTAAAGAAGATGAGGTAGATGCTAATAACTCCGCTCCTGGTGTAAGTAATCATGGAACTGAAGGTGGATCAGGCTTCTTGGCGTT
CAGTGATGGCAACATTGAAGATCAGTATGTCCAGGTTAACAGAACTGATAGTGATCAGGTTAATGGTGAAACAGAAGTTGACATGGATCTGGTCGATTCG
CCTATGCATGTTAATATTCAAGTGACTGAGGTTTTTTCTGTTCAAGACAACATGCCTAGCACGTTGAATGCTGAGAATGGCAGCCTTTACGCACCCCCTG
AGAGTTGTAAAGCTCGAACAGGGGTTAAGAGAACAAGGATGACTTACGAACAACAGCAACCTTCAGTGCGAGTCATGTATAATTCACTAGCGAGAGCTAG
CAAACGGAAACTTGATGGGCTACTCCAACAGTGGTCAGAATGGCATACAACTAACAGCATGTATCTAGATCCAGATGAATCATTAGAATCTGGCGAAGAA
ACATATTTTCCTGCCATACGCACTGGCATCGAGAAGTCCTGCACAGTCTCTTTCTGCATAGACGACCGGACAAGAGACGAGCAGAACAATGGCACCATGC
CACTTGACAGCAACAGTGTGCCCCTTTATGACCGGGGATTTCTTTTGGGTTTGACATCAGCAGATGGCCCACAGAATGCAGAAAGAAGCCTGGAGATAGT
GGGTGATGCTGCTCGTTGCTTCAACTGTGGTTCCTACAATCATGCTCTAAAAGATTGCAATAAGCCTCGTGACAACCTTGCTGTTAGTAATGCCCGCAAA
CAACATATGGCCAAACGGAATCAGAATCCCCATTCTCGCAGTTCCATTCGGTACTATCAGAGCTCATCTGGTGGGAAGTATGATGGCTTGAAACCTGGTA
CGCTTCACGCCGAAACACGGGCACTTTTGGGAATTGGGGAGCTTGATCCACCACCCTGGCTAAACAGAATGCGCGAGCTGGGTTACCCTCCTGGATATCT
AGATGCCGATAGTGAAGATCAACCATCAGGAATAACAATATTCGGTGAAGAAGTCATCAGTGACTTAATAAAGAAAAAGGAAGTCATCATTGAAGAACAG
GAAGAAGGGGAAATAAATGAAATAAATGTCGCCGAGCCCAGCAAGAATAAGACAGTAGAAGAAGGGGAGTTGAATGAAATAAACATAGTCGAGCCTGCCA
AGAAGAAGACAGTAGAGTTCCCCGGAATAAACGCCCCGATCCCAGAGAATGCCGATGAATTTCTCTGGGCGCGGGCTTCCTCTAGTTTTTCTGATACTTA
CAGGAACCGGTCACAACGTGAGCACACTAGCAGGTTTTACCACAGCGAACAAAAACGGTCTAGGAGTTTCATGGATGATGGACCACCAGGCGTTGACCCG
ATAATAAGCCCTTCAATATCCAGTTATCCTACGAGATACGGAAGCCATGGTGGTTATGACAGCCCTAGAGACCTTGCGCCTGTCTTTGCAAGAGATAGAG
AATGGAGGAGCCCTCCTCGATACGATGATTATAGCAGTCGGGCCTCGTACCGTTCGCCACGTGAATATAGCAGTTCGAGATACGAATACGACATGGATGA
TAGATGGGATGGTCGTGGTGGTGCGGATCATTCGTCGTGCTACGACTATGAATTTGAAGGGCATCACCACTCTAGAAGGCGGATGCCCTAG
AA sequence
>Lus10003067 pacid=23154537 polypeptide=Lus10003067 locus=Lus10003067.g ID=Lus10003067.BGIv1.0 annot-version=v1.0
METEENIGTPAGCDSEGIKQDNNPDLQPSVDDSQSHLGIKEDEVDANNSAPGVSNHGTEGGSGFLAFSDGNIEDQYVQVNRTDSDQVNGETEVDMDLVDS
PMHVNIQVTEVFSVQDNMPSTLNAENGSLYAPPESCKARTGVKRTRMTYEQQQPSVRVMYNSLARASKRKLDGLLQQWSEWHTTNSMYLDPDESLESGEE
TYFPAIRTGIEKSCTVSFCIDDRTRDEQNNGTMPLDSNSVPLYDRGFLLGLTSADGPQNAERSLEIVGDAARCFNCGSYNHALKDCNKPRDNLAVSNARK
QHMAKRNQNPHSRSSIRYYQSSSGGKYDGLKPGTLHAETRALLGIGELDPPPWLNRMRELGYPPGYLDADSEDQPSGITIFGEEVISDLIKKKEVIIEEQ
EEGEINEINVAEPSKNKTVEEGELNEINIVEPAKKKTVEFPGINAPIPENADEFLWARASSSFSDTYRNRSQREHTSRFYHSEQKRSRSFMDDGPPGVDP
IISPSISSYPTRYGSHGGYDSPRDLAPVFARDREWRSPPRYDDYSSRASYRSPREYSSSRYEYDMDDRWDGRGGADHSSCYDYEFEGHHHSRRRMP

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G38600 Proline-rich spliceosome-assoc... Lus10003067
[exp]
0 1
AT4G29940 HD PRHA pathogenesis related homeodoma... Lus10015536
[exp]
1.4 0.7490
AT5G49720 TSD1, IRX2, DEC... TUMOROUS SHOOT DEVELOPMENT 1, ... Lus10026275
[exp]
8.2 0.6993
AT4G14145 unknown protein Lus10040412
[exp]
11.0 0.6631
AT2G39580 unknown protein Lus10029459
[exp]
11.6 0.6962
AT1G15240 Phox-associated domain;Phox-li... Lus10035877
[exp]
12.1 0.7135
AT2G36370 ubiquitin-protein ligases (.1) Lus10035561
[exp]
12.8 0.7079
AT5G02770 MOS11 modifier of snc1, 11, unknown ... Lus10014023
[exp]
13.0 0.6765
AT5G36930 Disease resistance protein (TI... Lus10005373
[exp]
14.8 0.6661
AT5G65380 MATE efflux family protein (.1... Lus10020951
[exp]
15.0 0.6568
AT2G45770 FRD4, CPFTSY FERRIC CHELATE REDUCTASE DEFEC... Lus10003676
[exp]
17.8 0.6889

Lus10003067 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.