Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45070 63 / 4e-12 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G07010 63 / 5e-12 ATST2A ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) AT2G14920 61 / 2e-11 ATST4A ARABIDOPSIS THALIANA SULFOTRANSFERASE 4A, sulfotransferase 4A (.1) AT1G13420 61 / 3e-11 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT5G43690 61 / 4e-11 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G13430 60 / 5e-11 ATST4C ARABIDOPSIS THALIANA SULFOTRANSFERASE 4C, sulfotransferase 4C (.1) AT5G07000 59 / 2e-10 ATST2B ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, sulfotransferase 2B (.1) AT2G03750 59 / 2e-10 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G45080 56 / 1e-09 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G28170 56 / 2e-09 SOT7 sulphotransferase 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003070 [exp] 159 / 4e-48 AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031624 [exp] 122 / 6e-34 AT3G45070 209 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033716 [exp] 118 / 2e-32 AT3G45070 197 / 7e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031623 [exp] 117 / 5e-32 AT2G03760 201 / 3e-62 ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) Lus10018047 [exp] 116 / 1e-31 AT1G74100 208 / 7e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10033718 [exp] 115 / 4e-31 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10033721 [exp] 109 / 6e-28 AT1G18590 223 / 6e-67 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Lus10033720 [exp] 104 / 3e-27 AT1G74100 229 / 6e-73 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10033719 [exp] 97 / 3e-24 AT3G45070 196 / 2e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G193300 [exp] 68 / 1e-13 AT5G07010 378 / 4e-131 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193400 [exp] 65 / 9e-13 AT5G07010 393 / 6e-137 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193500 [exp] 65 / 1e-12 AT5G07010 446 / 1e-157 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193200 [exp] 64 / 2e-12 AT5G07010 384 / 1e-133 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193250 [exp] 63 / 4e-12 AT5G07010 395 / 9e-138 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.001G036600 [exp] 63 / 5e-12 AT5G07010 292 / 2e-97 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G189066 [exp] 59 / 1e-10 AT5G07010 324 / 5e-110 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.001G036500 [exp] 59 / 1e-10 AT5G07010 227 / 2e-73 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.017G100500 [exp] 57 / 6e-10 AT1G13420 221 / 2e-70 ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) Potri.004G031400 [exp] 57 / 7e-10 AT1G13420 248 / 2e-80 ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00685 [flax] [poplar] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Lus10003068 pacid=23154527 polypeptide=Lus10003068 locus=Lus10003068.g ID=Lus10003068.BGIv1.0 annot-version=v1.0 ATGAGTTCAACGGATCAGATTCTTGATCACGGCAACAAAGTTGCAGCAGAAGTGTTTTGGGATGCTATTGAGATGACCCAGATAGATGGATTCTGGTATT CCTCCACAAGTGTGCGCTACATTGATGCCTTCAGAGCGAACTTCGAGCCCAGCCGAGACGACGTTGTAGTCTTGGCATCGGTCAGGAAAACAGGAACAAC TTGGCTCAAGGCTCTCTGTTATTCCATCCTCTATCGAGGCGAAGAAGAAGAAGATGATCTTGCGAGGATGAATTCTCATAGCTGTGTTCCCACCTTTGAG TCTACTCTCTATATCGGCAACCCATCAATCCCTCGCCTTGACCCTGGCATTCTCCCTTCCACTGGAGAGAGCCGTGGAGAGCTTCTGCAGCGGAGTGATG CCGTTCGGGCCATACCGGGAGCACGTGTTGGAGTACTGGGAAGAAAGCAAGAAGTCTCCCGACAAGGTGATGTTTATCAAGTACGAGGATCTTCACCGCG AACCGAAACTGCACGCTCGTAA
AA sequence Show only first row Show all	>Lus10003068 pacid=23154527 polypeptide=Lus10003068 locus=Lus10003068.g ID=Lus10003068.BGIv1.0 annot-version=v1.0 MSSTDQILDHGNKVAAEVFWDAIEMTQIDGFWYSSTSVRYIDAFRANFEPSRDDVVVLASVRKTGTTWLKALCYSILYRGEEEEDDLARMNSHSCVPTFE STLYIGNPSIPRLDPGILPSTGESRGELLQRSDAVRAIPGARVGVLGRKQEVSRQGDVYQVRGSSPRTETARS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45070			P-loop containing nucleoside t...		Lus10003068 [exp]	0	1
AT1G31860		HISN2, AT-IE	HISTIDINE BIOSYNTHESIS 2, hist...		Lus10043483 [exp]	2.2	0.8847
AT2G44820			unknown protein		Lus10026825 [exp]	2.4	0.8863
AT3G01680		SEOR1, SEOb	Sieve-Element-Occlusion-Relate...		Lus10000546 [exp]	2.6	0.8971
					Lus10021453 [exp]	3.2	0.8967
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10001235 [exp]	4.9	0.8237
AT1G65390		ATPP2-A5	phloem protein 2 A5 (.1.2)		Lus10018301 [exp]	4.9	0.8804
					Lus10015310 [exp]	6.5	0.8779
AT4G15250	CO	COL11	B-box type zinc finger protein...		Lus10039695 [exp]	6.6	0.8285
AT5G19730			Pectin lyase-like superfamily ...		Lus10034981 [exp]	6.9	0.8861
AT4G36950		MAPKKK21	mitogen-activated protein kina...		Lus10034246 [exp]	6.9	0.8770

Compare expression of checked genes

Lus10003068 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.