Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G45070 219 / 2e-69 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G07010 213 / 2e-66 ATST2A ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) AT3G45080 207 / 1e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G13420 207 / 2e-64 SST1, ATST4B ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) AT2G03760 206 / 4e-64 AtSOT12, AtSOT1, ATST1, RAR047, ST ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) AT5G43690 206 / 7e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G07000 204 / 4e-63 ATST2B ARABIDOPSIS THALIANA SULFOTRANSFERASE 2B, sulfotransferase 2B (.1) AT1G74100 200 / 1e-61 SOT16, ATSOT16, CORI-7, ATST5A CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) AT1G28170 197 / 1e-60 SOT7 sulphotransferase 7 (.1) AT2G03770 196 / 4e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034079 [exp] 479 / 1e-171 AT3G45070 206 / 1e-64 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033718 [exp] 399 / 1e-139 AT1G74100 209 / 3e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10031624 [exp] 398 / 3e-139 AT3G45070 209 / 2e-65 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033716 [exp] 384 / 1e-133 AT3G45070 197 / 7e-61 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10033719 [exp] 381 / 1e-132 AT3G45070 196 / 2e-60 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10031623 [exp] 378 / 2e-131 AT2G03760 201 / 3e-62 ARABIDOPSIS THALIANA SULFOTRANSFERASE 1, sulphotransferase 12 (.1) Lus10033720 [exp] 368 / 3e-127 AT1G74100 229 / 6e-73 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10018047 [exp] 362 / 4e-125 AT1G74100 208 / 7e-65 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Lus10033721 [exp] 367 / 8e-123 AT1G18590 223 / 6e-67 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G032700 [exp] 236 / 7e-76 AT1G74100 295 / 4e-99 CORONATINE INDUCED-7, ARABIDOPSIS SULFOTRANSFERASE 5A, sulfotransferase 16 (.1) Potri.003G193400 [exp] 233 / 2e-74 AT5G07010 393 / 6e-137 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.003G193300 [exp] 232 / 4e-74 AT5G07010 378 / 4e-131 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.004G031400 [exp] 230 / 4e-73 AT1G13420 248 / 2e-80 ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) Potri.003G193500 [exp] 229 / 8e-73 AT5G07010 446 / 1e-157 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.011G048300 [exp] 228 / 8e-73 AT1G18590 244 / 1e-78 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.003G193250 [exp] 227 / 2e-72 AT5G07010 395 / 9e-138 ARABIDOPSIS THALIANA SULFOTRANSFERASE 2A, sulfotransferase 2A (.1) Potri.017G100500 [exp] 226 / 5e-72 AT1G13420 221 / 2e-70 ARABIDOPSIS THALIANA SULFOTRANSFERASE 4B, sulfotransferase 4B (.1) Potri.011G048200 [exp] 225 / 2e-71 AT1G18590 273 / 7e-90 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1) Potri.011G049100 [exp] 222 / 3e-70 AT1G18590 266 / 3e-87 ARABIDOPSIS SULFOTRANSFERASE 5C, sulfotransferase 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00685 [flax] [poplar] Sulfotransfer_1 Sulfotransferase domain
Representative CDS sequence Show only first row Show all	>Lus10003070 pacid=23154518 polypeptide=Lus10003070 locus=Lus10003070.g ID=Lus10003070.BGIv1.0 annot-version=v1.0 ATGAGTTCAACAGAAGCAACAGAGCAGCTTCTTCTTGATGATCATGGCAACGAAGTTCCAGACAAGGAGGAACAACAAGTCATGTTTTGGGATGCTGATG AGATGACCCAGATACATGGGTTCTGGTATTCCGCCAGAACTGCGGGCTACGCAGATGCCTTGAGAGAAAACTTCCAGCCCAGTCGAGACGACGTCGTAGT CTTGGCATCGGCCAGGAAAACAGGAACGACTTGGCTCAAGGCTCTCTGTTATTCCATCCTCTCTCGAGACGGCGACGAAGAAGATGATCTTCTTGTGAGG ATGAATCCTCATGGCTGTGTTCCCACCTTCGAGACTACTCTCTATAATGACCACCCAACAATCTCTCGTCTTGATCCTGATCGTAGGCTATACCATACTC ATGTTCCTTACAGCAACCTTCCGGATTCCATAACAAGGAAACCGAACGGGTGCAAATTCGTATACATCACAAGAGGGCCAAAGGACACATTGGTGTCCCA ATGGCATTTCTACAACAAAATATACGGCCGAGAGTCTCATGATCCCTTCCCAATGGAGAGAGCCGTGGAGAGCTTCTGTAGCGGGGTGATGTTGTTCGGG CCATACTGGGAGCATGTGTTGGAGTACTGGCAAGAGAGCAAGAGGTATCCCGAGAAGGTGATGTTCATCAAGTACGAGGATCTTCACCGCGAACCGAAAT TCCACGTTCGCAAGCTGGCATCGTTTCTCGGAAGGCCATTTGGGGATGATGATGACGATTGTGAAGTTGAGAAGGTTATATGGAGGAGCAGCTTTGACCG GCTTAAGGATTTGGAAGTCAACAAGACAGGGAAGCCACCTCATGCTAGCTCGGTGCCTCTTATGAGGAACAAGCACTTCTTCCGTCGAGGCGAAGTTGGG GACTGGCGAAACTACTTGAGTTTGGAGATGGCGAAACGTATTGATGACATCACGAGGGACAAGTTTCATGGTGTTGGGCTTCGGATGGACGAGGAGGATG CTCTTTAG
AA sequence Show only first row Show all	>Lus10003070 pacid=23154518 polypeptide=Lus10003070 locus=Lus10003070.g ID=Lus10003070.BGIv1.0 annot-version=v1.0 MSSTEATEQLLLDDHGNEVPDKEEQQVMFWDADEMTQIHGFWYSARTAGYADALRENFQPSRDDVVVLASARKTGTTWLKALCYSILSRDGDEEDDLLVR MNPHGCVPTFETTLYNDHPTISRLDPDRRLYHTHVPYSNLPDSITRKPNGCKFVYITRGPKDTLVSQWHFYNKIYGRESHDPFPMERAVESFCSGVMLFG PYWEHVLEYWQESKRYPEKVMFIKYEDLHREPKFHVRKLASFLGRPFGDDDDDCEVEKVIWRSSFDRLKDLEVNKTGKPPHASSVPLMRNKHFFRRGEVG DWRNYLSLEMAKRIDDITRDKFHGVGLRMDEEDAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G45070			P-loop containing nucleoside t...		Lus10003070 [exp]	0	1
AT5G64240		AtMCP1a, ATMC3	metacaspase 1a, metacaspase 3 ...		Lus10035630 [exp]	1.7	0.9711
AT4G32870			Polyketide cyclase/dehydrase a...		Lus10006042 [exp]	1.7	0.9638
					Lus10032860 [exp]	3.5	0.9662
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10033405 [exp]	4.0	0.9597
AT2G18196			Heavy metal transport/detoxifi...		Lus10008284 [exp]	4.5	0.9542
AT1G69970		CLE26	CLAVATA3/ESR-RELATED 26 (.1.2)		Lus10010735 [exp]	4.9	0.9538
AT5G27690			Heavy metal transport/detoxifi...		Lus10020906 [exp]	6.0	0.9508
AT2G22475		GEM	GL2-EXPRESSION MODULATOR, GRAM...		Lus10010279 [exp]	6.0	0.9483
AT5G13700		ATPAO1, APAO	polyamine oxidase 1 (.1)		Lus10042168 [exp]	7.4	0.8977
					Lus10038232 [exp]	7.9	0.9535

Compare expression of checked genes

Lus10003070 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.