Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 365 / 2e-114 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 356 / 2e-110 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 355 / 3e-110 EFR EF-TU receptor (.1) AT3G47090 350 / 2e-108 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 348 / 5e-108 Leucine-rich repeat protein kinase family protein (.1) AT5G39390 271 / 1e-83 Leucine-rich repeat protein kinase family protein (.1) AT2G24130 265 / 2e-77 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 257 / 7e-74 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 246 / 5e-70 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G35710 241 / 2e-68 Protein kinase family protein with leucine-rich repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035429 [exp] 635 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10031043 [exp] 633 / 0 AT3G47570 756 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 622 / 0 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033330 [exp] 622 / 0 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033362 [exp] 545 / 0 AT3G47570 784 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033384 [exp] 536 / 2e-179 AT3G47570 739 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033363 [exp] 496 / 8e-164 AT3G47570 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10035726 [exp] 469 / 1e-150 AT3G47570 716 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037310 [exp] 411 / 2e-131 AT3G47570 744 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G037400 [exp] 404 / 1e-128 AT3G47570 786 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 400 / 3e-127 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 396 / 9e-126 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 395 / 2e-125 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 389 / 3e-123 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 389 / 3e-123 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G152500 [exp] 388 / 1e-122 AT3G47570 753 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 386 / 5e-122 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 385 / 9e-122 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G033700 [exp] 385 / 2e-121 AT3G47570 799 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10003072 pacid=23154509 polypeptide=Lus10003072 locus=Lus10003072.g ID=Lus10003072.BGIv1.0 annot-version=v1.0 ATGCTTGGGTCGTCGTTGAGAATGCTTCATGTCTTCAGAATGGGGACCAACAACCTGACAGGGGGAATTCCTGCTTCCATGGGGAACCTGTCGCAGCTCG TGGCATTCGCGGTGGCGTATAATAATCTGGTCGGAGAAATTCCTGACTCCGTGGGTCAGCTCTCCAGGATCGAGAATTTTGTGGTTGGGGTGAACCAGCT CAACAAGGACTTCGAGTTCACTCTCCCAAATCTCCAGGCCTACGCCAATTCAGAAAACCTGATGTCAGGACCTATCTCGCGATCGTTCTGCAACGTTTCT CAATTAGAGCGAGTCAACATGAACCGGAATAGCTTCCACGGGAGATTCCCGACGTGCCTTGGAAGTCTCTCGAAACTCATCAGTTTCGATACGGCAGATA ACAATCTCGGGACGAATTCGACAGGTGACTTTGAGTTCATAACAGGGTTGACTAATTGCAGTCAGTTGCAGGCGATTGGTGACAATCAGATCAGAGGGGC ACTTCCCGACGGACTGGAGAATCTGGTCAACCTGATGGATGTGGACCTGTCTAGTAACATCCTGACAGGAAAATTTCCTTCTTATTTCGGCCAGATGCAC AACCTACAGGGACTACTCTTGAACGGAAACAGATTTTACGGTCCGATTCCATCCGTTATCGGAAACTTGAGCGTGTTGAGCCAACTCGACATTTCGAGTA ACCGACTCGAAGGAGCCATTCCGTTGAGTCTAAGAAGCTGCCAACAGTTGAACCTGCTGGATACCAGTGCCAACAAACTCACTGCGGGAACATTCCTGCA GCTGTGGCCTCTCTCCAAAACATGGAAAGTTTGGATCTTTCCCAGAACAAATTTTCAGGTGGAATCCCATCAGGATTACAACGTTCAAGCTCTGCAGAAT TTGAATCTCTCGTTTAACAACCTCCAGGGAGAGGTTCCAAATAAGGGCGTGTTTGCAAATGCAAGTAACATATCTTTTGAGGGGAATAAGTTGCTCTGCG GTGGCATCTCGGAGCTTCGATTACAAGTTTGCCTGACTGCGAGAACAATTAAACAGAAACGAGCTGCAACGGTTAAGCTCACACTGAAAATTTTGTTACC CTGTCTGACTTCGCTTTTGCTATCTGCAATTTCGTATCAGTATTATAAGCTGTGGAGATCAAAGAAGCAACCTGCTGTGGCAGATTCTATTTTGAGCCAC TTTGTGATGGTTTCTTACAAAGACCTCTATGAAGGAACGAATGGATTCTCTTCTGACAATGTAATTGGATCAGGTGGATTCGGCACCGTCTACAAAGGAG AGATACTGTTGGATGGAATGGATCAGACTTCAGTAGCTGTGAAAGTACTTAAAATTCAAGAGAATAAAGCTCAGAAGAGCTTGGTGGCTGAATGCAATGC ATTGAAGAATGTCCGACACAGGAATCTTGTTACAGTCTTGACGTATTGCTCTAGCTTAGATCGTAAGGGCAATGGTTTCAAGGCTCTGGTATTTGAGTTC ATGTCCAATGGCAGCCTGGAAGACTGGCTCCACTTGGCTCGTAGCGAATTGAGCCTAATCCAAAGGCTTAACATTTTGGTAGATGTCGCGTTAGCATTGC ATTATCTGCACAACCTGTGCGAAACTCCGATCGTTCACTTTGACCTGAAGCCAAGCAACATACTTTTGGATGCTGATATGGTTGCTCATGTTGGAGACTT TGGTCTCGCGAGGATTTTGTCATCCGAAAGCTCGTCCCCAAACGAAGGTAGCACGATTGGAATCAAAGGAACAATTGGTTACACACCTCCAGAGTACGGG ATGGGAATGCCGGTATCGAAAGAAGGTGATGTGCATAGCTACGGGATCCTTGTGCTGGAGATGTTCACCGGGAAAAGACCCACGAACTAA
AA sequence Show only first row Show all	>Lus10003072 pacid=23154509 polypeptide=Lus10003072 locus=Lus10003072.g ID=Lus10003072.BGIv1.0 annot-version=v1.0 MLGSSLRMLHVFRMGTNNLTGGIPASMGNLSQLVAFAVAYNNLVGEIPDSVGQLSRIENFVVGVNQLNKDFEFTLPNLQAYANSENLMSGPISRSFCNVS QLERVNMNRNSFHGRFPTCLGSLSKLISFDTADNNLGTNSTGDFEFITGLTNCSQLQAIGDNQIRGALPDGLENLVNLMDVDLSSNILTGKFPSYFGQMH NLQGLLLNGNRFYGPIPSVIGNLSVLSQLDISSNRLEGAIPLSLRSCQQLNLLDTSANKLTAGTFLQLWPLSKTWKVWIFPRTNFQVESHQDYNVQALQN LNLSFNNLQGEVPNKGVFANASNISFEGNKLLCGGISELRLQVCLTARTIKQKRAATVKLTLKILLPCLTSLLLSAISYQYYKLWRSKKQPAVADSILSH FVMVSYKDLYEGTNGFSSDNVIGSGGFGTVYKGEILLDGMDQTSVAVKVLKIQENKAQKSLVAECNALKNVRHRNLVTVLTYCSSLDRKGNGFKALVFEF MSNGSLEDWLHLARSELSLIQRLNILVDVALALHYLHNLCETPIVHFDLKPSNILLDADMVAHVGDFGLARILSSESSSPNEGSTIGIKGTIGYTPPEYG MGMPVSKEGDVHSYGILVLEMFTGKRPTN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10003072 [exp]	0	1
AT3G47090			Leucine-rich repeat protein ki...		Lus10003071 [exp]	2.0	0.9040
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10003262 [exp]	2.4	0.8928
					Lus10031026 [exp]	4.7	0.9162
AT5G10530			Concanavalin A-like lectin pro...		Lus10029555 [exp]	4.9	0.9086
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10039743 [exp]	5.3	0.9104
AT4G21440	MYB	ATMYB102, ATM4	A. THALIANA MYB 4, MYB-like 10...		Lus10018525 [exp]	11.5	0.8668
					Lus10031407 [exp]	15.3	0.8981
					Lus10004451 [exp]	16.4	0.8063
					Lus10009436 [exp]	17.2	0.8748
					Lus10010246 [exp]	17.4	0.8155

Compare expression of checked genes

Lus10003072 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.