Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G21060 494 / 7e-176 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) AT1G31230 171 / 5e-47 AK-HSDHI ,AK-HSDH I aspartate kinase-homoserine dehydrogenase i (.1) AT4G19710 166 / 3e-45 AK-HSDHII, AK-HSDH ,AK-HSDH II aspartate kinase-homoserine dehydrogenase ii (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034077 [exp] 648 / 0 AT5G21060 561 / 0.0 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) Lus10041071 [exp] 159 / 9e-43 AT4G19710 1373 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Lus10030339 [exp] 150 / 1e-39 AT4G19710 1415 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G196200 [exp] 560 / 0 AT5G21060 509 / 0.0 Glyceraldehyde-3-phosphate dehydrogenase-like family protein (.1.2.3) Potri.019G071700 [exp] 174 / 8e-48 AT4G19710 1470 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2) Potri.013G099500 [exp] 169 / 4e-46 AT4G19710 1425 / 0.0 aspartate kinase-homoserine dehydrogenase ii (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03447 [flax] [poplar] NAD_binding_3 Homoserine dehydrogenase, NAD binding domain CL0139 [flax] [poplar] GADPH_aa-bio_dh PF00742 [flax] [poplar] Homoserine_dh Homoserine dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10003073 pacid=23154539 polypeptide=Lus10003073 locus=Lus10003073.g ID=Lus10003073.BGIv1.0 annot-version=v1.0 ATGAAGACGATTTCTCTGCTTCTGATGGGATGTGGAGGAGTTGGTCGCCACCTCCTTCACCATATTCTCTCCTCTCGATCTCTTCATGCCAAGCAGGGAA TCCACTTGAGGGTTGTGGGCGTCTCTGATAGCAAATCGTTAGTTGTTGCATCCAATGTGTTAACGGGGGAACTCAAAGATAACTTCTTGTCTGAAGTTTG CCGGGTCAAGTCAGATGGTTCTTCCCTCTCAAAACTTGTTGAACTTGGTGACTGCCATCTGCACATGGATTCTGAATCCAGAAGTAAAATGATGGAGATC GCAGCTCTTCTTGGAAAATCAACAGGTTTTGTGTTTGTAGACTGCTCTGCCAGTTCAGAGACTGTTGAAATACTGACTCAAGTAGTTGATCTAGGATGTT GCATTGTCTTGGCAAACAAGAAACCTCTTACCTCATCAATGGAACGCTATGGCAAACTTGCTCTGTATCCCCGTCGTATTCACCATGAATCCACAGTTGG TGCAGGCCTTCCGGTGATAGCATCCTTGAACCGCTTACTTTCATCTGGAGACCCTATTCATCGCATAGTTGGAAGTTTGAGTGGCACATTGGGATATTTG ATGAGCGAGGTTGAAGATGGAAAGCCACTAAGTGAAGTTGTTAAAGCAGCTAAAACTCTGGGCTTCACAGAGCCAGATCCACGTGATGACCTTAGCGGGA TGGACGTCGCGAGGAAGGCTTTGATCCTTGCTCGACTACTTGGGAAACGGATTACCATGGATAGCATTAAAATTAAAATCTTGTATCCTGATGAGATGGG ACCTGAAGTGATGTCTGTCGAAGAATTCTTGAGCAAAGGCATCTCGTTACTTGATAGTGATGTTCAAGAAAGAGTTAGAAACGCATCCATGCATGGCAAC GTGCTCCGTTATGTTTGTGTTATTGAGGATTCAAGGTGTGAGGTTGGCATACAAGAGCTTCCGAAGAACTCTCCCTTGGGAAGATTGAGAGGAAGCGACA ATGTGCTCGAGATATATAGCCGGTGTTACAGTGAACAGCCACTTGTTATCCAAGGTGCTGGGGCAGGCAACGATACCACTGCGGCCGGTGTTCTTGCCGA TATTCTGGACATCCAAGATCTGTTTCCTTGA
AA sequence Show only first row Show all	>Lus10003073 pacid=23154539 polypeptide=Lus10003073 locus=Lus10003073.g ID=Lus10003073.BGIv1.0 annot-version=v1.0 MKTISLLLMGCGGVGRHLLHHILSSRSLHAKQGIHLRVVGVSDSKSLVVASNVLTGELKDNFLSEVCRVKSDGSSLSKLVELGDCHLHMDSESRSKMMEI AALLGKSTGFVFVDCSASSETVEILTQVVDLGCCIVLANKKPLTSSMERYGKLALYPRRIHHESTVGAGLPVIASLNRLLSSGDPIHRIVGSLSGTLGYL MSEVEDGKPLSEVVKAAKTLGFTEPDPRDDLSGMDVARKALILARLLGKRITMDSIKIKILYPDEMGPEVMSVEEFLSKGISLLDSDVQERVRNASMHGN VLRYVCVIEDSRCEVGIQELPKNSPLGRLRGSDNVLEIYSRCYSEQPLVIQGAGAGNDTTAAGVLADILDIQDLFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G21060			Glyceraldehyde-3-phosphate deh...		Lus10003073 [exp]	0	1
AT4G13830		J20	DNAJ-like 20 (.1.2)		Lus10022550 [exp]	9.8	0.8783
AT4G24220		5[beta]-StR, 5[...	VEIN PATTERNING 1, Δ4,5-s...		Lus10039686 [exp]	11.6	0.8943
AT2G40260	GARP		Homeodomain-like superfamily p...		Lus10007513 [exp]	13.0	0.8993
AT3G07490		AtCML3, AGD11	calmodulin-like 3, ARF-GAP dom...		Lus10038088 [exp]	16.0	0.8895
AT3G21540			transducin family protein / WD...		Lus10022194 [exp]	17.3	0.8980
AT5G39950		ATTRXH2, ATTRX2...	Arabidopsis thioredoxin h2, th...		Lus10005258 [exp]	29.7	0.8342
					Lus10008301 [exp]	31.4	0.8931
AT3G10660		ATCPK2, CPK2	calmodulin-domain protein kina...		Lus10033400 [exp]	32.9	0.8869
					Lus10014873 [exp]	36.3	0.8915
					Lus10002465 [exp]	38.9	0.8903

Compare expression of checked genes

Lus10003073 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.