Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67230 545 / 5e-176 CRWN1, LINC1 CROWDED NUCLEI 1, little nuclei1 (.1) AT1G13220 320 / 1e-92 CRWN2, LINC2 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) AT1G68790 275 / 3e-77 CRWN3, LINC3 CROWDED NUCLEI 3, little nuclei3 (.1) AT5G65770 146 / 1e-35 CRWN4, LINC4 CROWDED NUCLEI 4, little nuclei4 (.1.2.3) AT5G65780 139 / 4e-33 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034076 [exp] 1627 / 0 AT1G67230 702 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10003075 [exp] 712 / 0 AT1G67230 805 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10034263 [exp] 391 / 1e-117 AT1G13220 672 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Lus10034075 [exp] 357 / 6e-107 AT1G67230 606 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10034383 [exp] 324 / 2e-93 AT1G13220 680 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Lus10019257 [exp] 117 / 3e-26 AT5G65770 835 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3) Lus10011568 [exp] 110 / 3e-24 AT5G65770 831 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G111400 [exp] 764 / 0 AT1G67230 793 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Potri.008G114800 [exp] 383 / 9e-115 AT1G13220 567 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Potri.012G034300 [exp] 170 / 7e-43 AT5G65770 844 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003074 pacid=23154528 polypeptide=Lus10003074 locus=Lus10003074.g ID=Lus10003074.BGIv1.0 annot-version=v1.0 ATGGGTATTCTTATCATGGAAAAGAAGGGATGGAGTGCTGAATTTGAAGAACTCAAGCAAGCATTAACTGACACGACGGATGGAATCAAACGGGAGCAAG CAGCACACTTGATGGCAATCTCTGATGCTGAGAGGCAAGAAGGGAAGTTGAGAGACACGTTGGATGTTGAAAAACACTGTGCGGTCGATTTGCAGAAGGC AGTTCAGGAGATGCACGCTGAAATTGCCGAAATGCAGTCCAGGGCCGATTCAAAACTGACTGATGCCAACACAATGGTGAGCAGTGTTGAAGAGAAGTAT CTAGATGTTGAGGCCCAACGACGGGCTATTGAAGCTAGGCTTGCAGAAGTGAGCAGAAAGAGCTCAGAGCTAGCCAGGAAATCGCTGGAGGTTGATTCAC TAGAAAGTTCTCTTCGACTGGAGCGTTTATCAGTGGCAACAGGGTGTGCTTACGTCTCCTTGAAAGAAGCACATGATACCGCTTTTTCTAAGCAAAGAGA TGAATTTCGAGAGTGGGAAAGAAAGCTAGAGGAGGAGGAACAACGATTGTCAAATGGCTTAAGAAGCATCAACCAAAGAGACGAAAAGGAATCTCATAGT GATAAAATATTTAAACAAAAAATAAAGGACTTAGGAGAGACACAGAGGAAGATAGATGAAGCGAACTCAATCTTGAAGAGGAAAGAAGATGATATTAGTA CTCGACGAACAAAATTTAATCTGATGGAAAAGGACTTAGTTGCTACGACAGAGAATCTACAGTTGAAGGAGAAGGAGTTACAAATACTTGAAGAGAAGTT GAATGAGAGGGAAAAAGTTGAGATTCCAAAACTCCTTAGCGAGCACAATACTATTTTGGATGCAAAACGATGTGAGTTTGAGTTGGAAGCTGAGGAAAGG AGCAAGGTTGTCGACGAGGAGTTAAAAAGCAAAGTGGTTAATCTGGAGAAGAAGGAATTTGACATCAAGCATATGGAGGAGACAGTTACAAAAAGAGAGC AGGTTTTGGATAAGAAACTGGACAAACTTAAGGATAAAGAAAATGATTTTGAATCCAAATCAGAAGGTCTCATGGAAAGGGAAAAGGTCACCAAATCTGA AGACCAAGCCTTGGAGGGAGAGAGAAGATGCGTGCAGAACGATAAAGAACAACTTCTGGACCTCAAAGCCGAACTTGAGAATATAAAAGCTACCAATGAG CGGCAGCTCCAAACCCTATGCGAAGAGAAAGAGAAACTCCAAATAAGTGAAGAGGAGAGGTCTGACTATGTCCGCTTGCAATCTGAGCTAAAAGTCGAAC TAGAACGGTGCAGATTTAGGGAGGAGCAGCTCTTGAAGGATGCTGCCGATTTGAAGCTGCAAAAGGAGAACTTTGAACGGGAGTGGGAAGAGTTGGATGA GAAAAGAACTGAAATTGAAAGAGAGAAGAAACGTCTTAGTGATGAGAAGGAAAAGTTTGAGAAGCAAAAGCAATTGGTAGAAGATAGGATAAAGCGTGAT AGAACAGCGATGAATGACTACGTAAAAAGGGAACTCGAGTCTCTTGAGTTAGCAAAGGAATCTTTCAAGGCAAACTTGGAGCATGAGCACAAGATTATGG CAGAGAAAGCACAAAGTGACAGGGACTTATTATTACATGACATTGAGCTACAGAAGTCTGAACTTGAGAGTAGCTTGCAGAAACTTCGGGAAGAAATGGA CAGAAACCTGCAGGAAAAGATGAGACTCTTTGAAGATGAGAAGCAGGGAGAATCGAAGAATGTTAATCTCTTGCGAGATGTAGCTAGAAGAGAGAAGGAA GATATAATCGCAGAAAGATCCAAGATAGAAAAAGACAGAAAACAACTTGATGAAAACAAGAAGCATCTCCAAGCGCAACAACTTGAAATTCATGAAGATA TCAGCAAGCTTGGTGATCTTAGTAGGAAGCTTAAGAAGCACAGGGAACAATTTATGAAAGAAAAAGATTCTTTTGTTGAGCAACGCAAGGGTTGCACTAA CTGTGAGGATATAACTTTCCAATTTCTGCTTTCGGGAGAAGATAACACAGATGTTTCTGCTTCCAGACAGGGATTAGAGAGCGAGAAGTCTCCTTCCGGC CACAGAGTATCCCCAGTATCTTGGCTACAAAAATATACTACAAAAATATTCAAGCTCTCACCACATAAGAGAGTAGAAAATTTGAAGGAGGGTGCTCCGG ACACGGACAAAGAAGCACTTTCCAACAAAGTTGATGTCCATGGGGATGAAAAAGAGCTATCTTTAGCTTATGGAAACCATTTGCGTGATGACCAAATGGT TTTTTCATGTTCTGGTGTGGCTGCAGCTGAAGATAATCTGTCATTGAATGACCTAAGCAACATCAACAGTGGCTCATTGGAGTTGGAAGAAGTCTCCCAA CCTTCTGATTTGAAGCATGGTACGGGTCGCTATAAACGAAGAGGAAAAGTGAGTAGAACACACTCTGTGAAGTCAGTTATTGCTGATGCCAAGGTGATTC TTGCGGAGCCATTGGAGGCTATTGTGGCTGAAGATTTGAGCCATTTGATATCTGAAAGCCATGAGGAAAATAGTCTTGCTGATGACCATACTCAAAGAAT TGCTGGAAGGAAGAGGAATCGAAGACTAGCCTCTCAGACACCTGCAAGCGAATGTGGTGGCAATGAGAGCGAAGGACACTCTGACAGCGTAACCGTTAGC AAGCGCAAGAAGAGTCAAGCAGGAACTACCAAGCAAGCTCCTGCTGAAACACGATATTATCTCCGGCGATCAAAACGGGGTGCCGTTGGGAATGCTGCAG CTGCGTCGGACTTGAAGAACGAAAATGAAGAAGAAGCCAACGGTGTGGTGCGTCCAGGGGATGGAAATATCTCGGGAGTTGATGCTACTGAGCGAGGCAA GAATGGACAATCTGCGCAGATTGAGGTAGTTGCAGAAGACATGGATGGTGAACCTAAGGCAGGGACAAACCAGGAAATGAGTGAAGAGGTGAGTGGGAGA CCGGTTATGGATGGGGAGAATGGGACTCCTAGCGAATCCGGCCGTGAAGATATGGATGATGGAGAAGAAGAAAAGTATGAACATCCCGGTGAAGCCTCAG TAGGAAAGAAGCTGTGGACATTTTTCACAACGTAG
AA sequence Show only first row Show all	>Lus10003074 pacid=23154528 polypeptide=Lus10003074 locus=Lus10003074.g ID=Lus10003074.BGIv1.0 annot-version=v1.0 MGILIMEKKGWSAEFEELKQALTDTTDGIKREQAAHLMAISDAERQEGKLRDTLDVEKHCAVDLQKAVQEMHAEIAEMQSRADSKLTDANTMVSSVEEKY LDVEAQRRAIEARLAEVSRKSSELARKSLEVDSLESSLRLERLSVATGCAYVSLKEAHDTAFSKQRDEFREWERKLEEEEQRLSNGLRSINQRDEKESHS DKIFKQKIKDLGETQRKIDEANSILKRKEDDISTRRTKFNLMEKDLVATTENLQLKEKELQILEEKLNEREKVEIPKLLSEHNTILDAKRCEFELEAEER SKVVDEELKSKVVNLEKKEFDIKHMEETVTKREQVLDKKLDKLKDKENDFESKSEGLMEREKVTKSEDQALEGERRCVQNDKEQLLDLKAELENIKATNE RQLQTLCEEKEKLQISEEERSDYVRLQSELKVELERCRFREEQLLKDAADLKLQKENFEREWEELDEKRTEIEREKKRLSDEKEKFEKQKQLVEDRIKRD RTAMNDYVKRELESLELAKESFKANLEHEHKIMAEKAQSDRDLLLHDIELQKSELESSLQKLREEMDRNLQEKMRLFEDEKQGESKNVNLLRDVARREKE DIIAERSKIEKDRKQLDENKKHLQAQQLEIHEDISKLGDLSRKLKKHREQFMKEKDSFVEQRKGCTNCEDITFQFLLSGEDNTDVSASRQGLESEKSPSG HRVSPVSWLQKYTTKIFKLSPHKRVENLKEGAPDTDKEALSNKVDVHGDEKELSLAYGNHLRDDQMVFSCSGVAAAEDNLSLNDLSNINSGSLELEEVSQ PSDLKHGTGRYKRRGKVSRTHSVKSVIADAKVILAEPLEAIVAEDLSHLISESHEENSLADDHTQRIAGRKRNRRLASQTPASECGGNESEGHSDSVTVS KRKKSQAGTTKQAPAETRYYLRRSKRGAVGNAAAASDLKNENEEEANGVVRPGDGNISGVDATERGKNGQSAQIEVVAEDMDGEPKAGTNQEMSEEVSGR PVMDGENGTPSESGREDMDDGEEEKYEHPGEASVGKKLWTFFTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10003074 [exp]	0	1
AT3G12170			Chaperone DnaJ-domain superfam...		Lus10026315 [exp]	1.4	0.8724
AT1G73350			unknown protein		Lus10042294 [exp]	3.0	0.8906
AT1G80270		PPR596	PENTATRICOPEPTIDE REPEAT 596 (...		Lus10031004 [exp]	3.5	0.8605
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Lus10007555 [exp]	6.7	0.8561
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10004188 [exp]	6.9	0.8632
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Lus10029774 [exp]	8.1	0.8364
AT5G26770			unknown protein		Lus10031444 [exp]	8.5	0.8485
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10005340 [exp]	10.5	0.8439
AT1G79030			Chaperone DnaJ-domain superfam...		Lus10043089 [exp]	10.9	0.8305
AT1G22940		THIE, TH-1, TH1	THIAMINEE, THIAMINE REQUIRING ...		Lus10015466 [exp]	12.5	0.8534

Compare expression of checked genes

Lus10003074 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.