Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67230 606 / 0 CRWN1, LINC1 CROWDED NUCLEI 1, little nuclei1 (.1) AT1G13220 372 / 2e-110 CRWN2, LINC2 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) AT1G68790 322 / 4e-93 CRWN3, LINC3 CROWDED NUCLEI 3, little nuclei3 (.1) AT5G65770 126 / 4e-29 CRWN4, LINC4 CROWDED NUCLEI 4, little nuclei4 (.1.2.3) AT5G65780 117 / 2e-26 ATBCAT-5 branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.1), branched-chain amino acid aminotransferase 5 / branched-chain amino acid transaminase 5 (BCAT5) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034075 [exp] 838 / 0 AT1G67230 606 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10034076 [exp] 690 / 0 AT1G67230 702 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10003074 [exp] 648 / 0 AT1G67230 681 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Lus10034263 [exp] 397 / 3e-119 AT1G13220 672 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Lus10034383 [exp] 391 / 9e-117 AT1G13220 680 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Lus10019257 [exp] 120 / 3e-27 AT5G65770 835 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3) Lus10011568 [exp] 117 / 2e-26 AT5G65770 831 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G111400 [exp] 882 / 0 AT1G67230 793 / 0.0 CROWDED NUCLEI 1, little nuclei1 (.1) Potri.008G114800 [exp] 439 / 1e-134 AT1G13220 567 / 0.0 LITTLE NUCLEI2, CROWDED NUCLEI 2, nuclear matrix constituent protein-related (.1.2) Potri.012G034300 [exp] 167 / 9e-42 AT5G65770 844 / 0.0 CROWDED NUCLEI 4, little nuclei4 (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003075 pacid=23154543 polypeptide=Lus10003075 locus=Lus10003075.g ID=Lus10003075.BGIv1.0 annot-version=v1.0 ATGTCGTCTTCTACCACACCGCAGAGGAAGACATGGTCCGTATGGTCTCTCACTCCCCGTAGAAATTTGCAGAAGTCTGGAGACCTTGAGACTCCCAATT CGAATGGCACGGCTTTCTCCAATTCTGGAGATGGGAGGGTTAGTCGTGCTCTGGATAGTGAGGATTTGACTGCAAAAATTTCAAGGCTCGAGAATCAGTT GTTTGAATACAGCATGGAGCTTCTTCTAGTTGAAAAGCAAGAGTGGAATGCTAAATCTGACCAACTCAAACAAGCCTTAGCTGACGTGAAGAACGCACTG AAGCAGGAACAAGCCTCCCAACTAATTCTGAACTCTGATGCTGAGAAGCGAGAGGAGAACTTGAGAAAGGAACTGGGAGTGAAAAAACAGTGTGTACTTG ATCTGGAGAAGACAGTGCAGGAGATGCGATATGAAAATGCTGAAATTAAGTTCATGGCTGACTCAAAGTTGGCTGAGGCAAATGCACTGATGAGCAGCGT TGAAGAAAACTCGCTCGAGGTTGAGGCAAAGCTTCGGTCAGTAGATGCTAGGCTGGCGGAAGTTAGCAGAAAGAGTTCAGAGCTAGAGAGGAAATCAAAG GATGTTGAAACCCGTGAATGTGCTCTTCGAAGGGATCGTTTGTCCTTGCTCGCAGAGAAAGAAGCACATGAAAACACTTTGTCTAACCAAAGAGAGGACT TGCGAGAATGGGAGAAGAAATTACAAGAGGAGGAGGAGAGGCTATCCAAGGGTCTTCGAATTGTCAACCAAAGAGAAGAAAGGGCGAACGAGAAGGATAG AGTTTCTAAACTAAAGGAGAAGGATCTTGAAGACGCACAAAAGAAGATTGATGAAGCAAATTCACTTTTGAAAAAGAAAGAAGACGACATAAATAGTCGC TTTGCTAATCTGAACCTTCGGGAAAATGAATTTGATGCTATCAAAAATAAGTTGGAGTTGAAAGAGGAGGAGTTGCGAGTCCTGGAAGAGAAGCTGAATG AAAGAGAGAAAATTGAGATCCAGAGGCTACTTGATGAGCATACTGCTTCTTTGGATGCTAAGAAATTGGAGTTTGAGATTGAAACTGAGCAAAGGAGGAA GTCCTTGGACGAGGAATTGAAAAGCAAAGTGCTTGAGGTGGAGAGAAAGGAAGCTGAAGTCAAGCATTATGAAGCAAAAGTTGCAAAAAGGGAGCTGGCG CTGGATAAGAGACTAGACAAGATTAAAGAAAAAGAAAAGGATGTTGAATCCAAATCAAAAGCTCACAAGGAAAGGGAGAAGGCCATCAAATGTGAGGAAA AGAACTTGATGGTGGCGAAAAAGCAACTGCAATCTGATGAAGAAGAACTTCTAAAACTTAAAGCTGAACTAGAGAATTCAAAGGCCACTAATGCGCAGCA GCTCCTCCATATTCAGGAAGAGAGAGAGAAACTCCAAATAAGTCAAGATGAGAGGTCCGAGTACTTACGTTTGCAAGCTGAACTGAAAGAGGAAACAGAA AAATGCAGATTTAGGGAAGAGCTACTTTTGAAGGAGGCTGAAGATTTAAAGCAGCAAAAGGAGAACTTTGAAAGGGAGTGGCTGGAATTGGATGGGAAAA AAGGTGAAATTGAAAGAGAGCTGAAAAACATGAGGGAGCAGATGGAGAAGTTTGAGAAGCAGAAGCTAATAGAGGAGGAGAAGTTAAACCATGATAGACA ATCTATCGACGATTACATCAAACAGGAGTCTAAGTCTCTCGAATTAGCAAAAGAGTCATTTAAGGCCAAGATGGAACATGAGCTGTCAATGTTGACTGAG AAAGCACAAAGTGATAAAAACATAATGTTGAACGACATTGAGCTGCAAAAGAGTGAAATTGAGAACAGCTTGCAACAAAAGCAAGAAGAAACAAACAAGC ATCTTCAGGAGAAAGAGAGATTGTTCGAGGAGGAGAAAGAGCGAGAATTGAAAAATCTCAATTACTTGAGAGATGTGGCTAGAAGAGAGATGGAGGAACT GAAGAGGGAGAGAGTAAGGATGGAAAAGGATAGGCAAGAGTTCGTTGAAAACAAGAAGCATCTCCAGGATCAACAGGTTGAGATACGAGAGGACATTGGT AAACTTGGAGATCTTAGCAAGAAGCTCAAGGACCACAGGGAAGTGTTCAGTAAAGAGAAAGAGCGATTCATTGCTTTTGTTGAGCAAACCAAGGATTGTA AAAACTGTGGTGAAAAAACATCCCAGTTTGTTCTTTCTGACCTTATCACCTCACAAGAAATTGAGAATGTTGACATCTTGCCTGTTTCAAGGCCATCTAG ATCTGAGAATTCGAATTTGGGAGCTTCTGGTAGGCTAGAGGCTGAGAAGTCTCCCTCTGTCAGTCACGCAGTAACTCCAGTTTCCTGGCTCCGGACAAAA ATATTCCAGTTCTCCCCGTTCAAAAGGGTTGATCTTGCAACAGACTTGACCGAGGGTGGTGCACCAGATATTGATGGGACAGAACCATCCAACAGATTGG AATTTTTTGAAGATGAGCAAGAGCTATCTTTATCATATGCAAATGATTCACTTGGAGGGGACCAGCGGGCACACTTTGGTACTGAAGAGCCTTCAGTATC GCAAGATCTTTCAGCAGAGAACCAAAGCAATATTAACAGCAAGTCATTGGAACTGCAAGAAATCTATGAGTCTTCTGATTTGAAGGGTGGGCGGGGTCGC AATAAAAGAAGAGTGAGAGTTGGTAAAACAAGATCGGTAAAAGCTGTTGTTGAAGAGCGAAATGCGACTGAAGACTCTGGCCATTTGCAATCTGGAAGTC ACGAGGAGTCTAGTCTTGCAGAAACCCGGAAAACTGGGAAAAAGAGAAGCAGAATTCAAACATCTCAAACTGCGACAGTTGAACATGATGGCAATGTTAG TGACGACCATTCTGGTAGCACAGTGGCTGGTAAACGCAGGAAGACACGGCAAAAAGTTGCTAGTGTACCAGTTGCTGGAGAATCAAGATACAATCTTCGC CGACCAAAACTGGAAGCTGGTGTGAATGCCAAAACCTCATCTGAGCTGAACCATAAAAAAAGAAAAGAGGACGCTGGTGTAATGGGTTCAAAGGACCGAG ATATATCCAAAAGAAAAGCTGCTACCGGTACAACATCCGCAGCTGAGGAAAATGGAGGGAGCGAACACATTGTCCCGGTGGAGGAAGTTGCAGAAGCAGA AGAACACAACGATGGAGCAGCTACTATTCGGGATGAAAACAAGGGAAATGGAACAATGGAAATGGACGAATCTCGTCGAGTGAGTGATGACAGCAGGGAT GGTGACGAAGATGACGAGGAGGAAGATGATGCAGAGTCTGAACATCCTGGTGAAGTGTCTGTAGGAAAGAAGCTGTGGACTTTCCTCACAACGTGA
AA sequence Show only first row Show all	>Lus10003075 pacid=23154543 polypeptide=Lus10003075 locus=Lus10003075.g ID=Lus10003075.BGIv1.0 annot-version=v1.0 MSSSTTPQRKTWSVWSLTPRRNLQKSGDLETPNSNGTAFSNSGDGRVSRALDSEDLTAKISRLENQLFEYSMELLLVEKQEWNAKSDQLKQALADVKNAL KQEQASQLILNSDAEKREENLRKELGVKKQCVLDLEKTVQEMRYENAEIKFMADSKLAEANALMSSVEENSLEVEAKLRSVDARLAEVSRKSSELERKSK DVETRECALRRDRLSLLAEKEAHENTLSNQREDLREWEKKLQEEEERLSKGLRIVNQREERANEKDRVSKLKEKDLEDAQKKIDEANSLLKKKEDDINSR FANLNLRENEFDAIKNKLELKEEELRVLEEKLNEREKIEIQRLLDEHTASLDAKKLEFEIETEQRRKSLDEELKSKVLEVERKEAEVKHYEAKVAKRELA LDKRLDKIKEKEKDVESKSKAHKEREKAIKCEEKNLMVAKKQLQSDEEELLKLKAELENSKATNAQQLLHIQEEREKLQISQDERSEYLRLQAELKEETE KCRFREELLLKEAEDLKQQKENFEREWLELDGKKGEIERELKNMREQMEKFEKQKLIEEEKLNHDRQSIDDYIKQESKSLELAKESFKAKMEHELSMLTE KAQSDKNIMLNDIELQKSEIENSLQQKQEETNKHLQEKERLFEEEKERELKNLNYLRDVARREMEELKRERVRMEKDRQEFVENKKHLQDQQVEIREDIG KLGDLSKKLKDHREVFSKEKERFIAFVEQTKDCKNCGEKTSQFVLSDLITSQEIENVDILPVSRPSRSENSNLGASGRLEAEKSPSVSHAVTPVSWLRTK IFQFSPFKRVDLATDLTEGGAPDIDGTEPSNRLEFFEDEQELSLSYANDSLGGDQRAHFGTEEPSVSQDLSAENQSNINSKSLELQEIYESSDLKGGRGR NKRRVRVGKTRSVKAVVEERNATEDSGHLQSGSHEESSLAETRKTGKKRSRIQTSQTATVEHDGNVSDDHSGSTVAGKRRKTRQKVASVPVAGESRYNLR RPKLEAGVNAKTSSELNHKKRKEDAGVMGSKDRDISKRKAATGTTSAAEENGGSEHIVPVEEVAEAEEHNDGAATIRDENKGNGTMEMDESRRVSDDSRD GDEDDEEEDDAESEHPGEVSVGKKLWTFLTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10003075 [exp]	0	1
AT4G36650		ATPBRP	plant-specific TFIIB-related p...		Lus10024022 [exp]	1.4	0.8613
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10008218 [exp]	2.4	0.8587
AT2G16676			unknown protein		Lus10035139 [exp]	3.5	0.8397
AT4G15900		PRL1	pleiotropic regulatory locus 1...		Lus10037500 [exp]	4.2	0.8511
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10023516 [exp]	5.5	0.8402
AT1G13220		CRWN2, LINC2	LITTLE NUCLEI2, CROWDED NUCLEI...		Lus10034263 [exp]	6.5	0.8101
AT5G14640		ATSK13	shaggy-like kinase 13 (.1)		Lus10022254 [exp]	6.6	0.8497
AT5G65530			Protein kinase superfamily pro...		Lus10035949 [exp]	7.4	0.8172
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10023537 [exp]	8.7	0.8089
AT3G26990			ENTH/VHS family protein (.1)		Lus10020327 [exp]	9.0	0.8295

Compare expression of checked genes

Lus10003075 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.