Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38630 253 / 3e-86 ACYB-1 cytochrome B561-1 (.1) AT1G26100 154 / 2e-47 Cytochrome b561/ferric reductase transmembrane protein family (.1) AT4G25570 142 / 9e-43 ACYB-2 Cytochrome b561/ferric reductase transmembrane protein family (.1) AT1G14730 112 / 7e-31 Cytochrome b561/ferric reductase transmembrane protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034074 [exp] 305 / 1e-105 AT5G38630 287 / 7e-98 cytochrome B561-1 (.1) Lus10039216 [exp] 164 / 4e-51 AT4G25570 305 / 6e-106 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10014986 [exp] 160 / 5e-49 AT4G25570 331 / 8e-115 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10038866 [exp] 158 / 1e-48 AT4G25570 326 / 3e-114 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10021715 [exp] 144 / 4e-43 AT1G26100 241 / 3e-80 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10027461 [exp] 143 / 1e-42 AT4G25570 287 / 3e-98 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10034427 [exp] 111 / 1e-30 AT1G14730 280 / 4e-96 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10031935 [exp] 101 / 9e-27 AT1G14730 284 / 8e-98 Cytochrome b561/ferric reductase transmembrane protein family (.1) Lus10035096 [exp] 96 / 3e-23 AT2G02010 835 / 0.0 glutamate decarboxylase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G111700 [exp] 280 / 6e-97 AT5G38630 321 / 2e-112 cytochrome B561-1 (.1) Potri.004G103800 [exp] 276 / 3e-95 AT5G38630 301 / 2e-104 cytochrome B561-1 (.1) Potri.008G115300 [exp] 227 / 6e-76 AT5G38630 272 / 7e-93 cytochrome B561-1 (.1) Potri.008G115200 [exp] 163 / 8e-51 AT1G26100 270 / 6e-92 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.010G131100 [exp] 163 / 1e-50 AT1G26100 270 / 6e-92 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.015G143700 [exp] 150 / 9e-46 AT4G25570 297 / 8e-103 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.012G141000 [exp] 149 / 2e-45 AT4G25570 254 / 5e-86 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.008G138300 [exp] 123 / 2e-35 AT1G14730 252 / 2e-85 Cytochrome b561/ferric reductase transmembrane protein family (.1) Potri.010G102400 [exp] 119 / 1e-33 AT1G14730 271 / 7e-93 Cytochrome b561/ferric reductase transmembrane protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0328 [flax] [poplar] 2heme_cytochrom PF03188 [flax] [poplar] Cytochrom_B561 Eukaryotic cytochrome b561
Representative CDS sequence Show only first row Show all	>Lus10003076 pacid=23154545 polypeptide=Lus10003076 locus=Lus10003076.g ID=Lus10003076.BGIv1.0 annot-version=v1.0 ATGGTGATCGGACTTCTACTTATGAATGGTGAAGCCATGTTAGCCTACAAGACAACTCCAGGAACCAAAAACTTCAAAAAGCTCGTGCATCTTGGCCTGC AGTTTCTTGCTCTCTGTTTGAGCTTGATTGGCGTGTGGGCTGCCTTGAAGTTCCACAACGATAAGGGCATTGACAACTTCTACAGTCTGCACTCGTGGCT AGGCCTAGCATGCCTTTTCCTCTTCGGCATTCAGTGGGCTGCAGGGTTCTTGACCTTTTGGTACCCAGGCGGTTCGAGAAACAGCAGAGCAACTTTAATG CCGTGGCATATCTTCTTTGGAGTTTATATATATGCACTTGCTATTGTTACAGCTACAACTGGTCTGCTCGAGAAAGCCACATTCCTTCAAATCAACAAGG TGATAACACGCTATTCGACGGAGGCTTTGATGGTAAACTCATTGGGAATCTTGATCGTTGTTCTTGGAGGATTTGTTGTTCTCGCGGTGGTAACTCCTCC ACGCGGCAAAGGTGAAATGCCCAGGAACGCGACGGAGTAG
AA sequence Show only first row Show all	>Lus10003076 pacid=23154545 polypeptide=Lus10003076 locus=Lus10003076.g ID=Lus10003076.BGIv1.0 annot-version=v1.0 MVIGLLLMNGEAMLAYKTTPGTKNFKKLVHLGLQFLALCLSLIGVWAALKFHNDKGIDNFYSLHSWLGLACLFLFGIQWAAGFLTFWYPGGSRNSRATLM PWHIFFGVYIYALAIVTATTGLLEKATFLQINKVITRYSTEALMVNSLGILIVVLGGFVVLAVVTPPRGKGEMPRNATE

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38630		ACYB-1	cytochrome B561-1 (.1)		Lus10003076 [exp]	0	1
AT1G10630		ATARFA1F	ADP-ribosylation factor A1F (....		Lus10001524 [exp]	1.4	0.9667
AT1G11925			Stigma-specific Stig1 family p...		Lus10012679 [exp]	2.4	0.9441
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10026519 [exp]	4.2	0.9451
AT5G43940		PAR2, ATGSNOR1,...	PARAQUAT RESISTANT 2, sensitiv...		Lus10000496 [exp]	5.5	0.9417
AT5G03290		IDH-V	isocitrate dehydrogenase V (.1...		Lus10013806 [exp]	6.0	0.9359
AT1G73160			UDP-Glycosyltransferase superf...		Lus10032187 [exp]	8.0	0.9439
AT1G28120			unknown protein		Lus10026630 [exp]	10.7	0.9430
AT1G30890			Integral membrane HRF1 family ...		Lus10025577 [exp]	11.5	0.9324
AT1G67325			Ran BP2/NZF zinc finger-like s...		Lus10006412 [exp]	11.6	0.9273
AT3G56490		HIT3, HINT1	HISTIDINE TRIAD NUCLEOTIDE-BIN...		Lus10031011 [exp]	11.8	0.9193

Compare expression of checked genes

Lus10003076 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.