Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38650 193 / 1e-64 Proteasome maturation factor UMP1 (.1) AT1G67250 190 / 3e-63 Proteasome maturation factor UMP1 (.1) AT5G38660 194 / 3e-61 APE1 acclimation of photosynthesis to environment (.1.2) AT1G62920 0 / 1 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034073 [exp] 265 / 4e-93 AT5G38660 197 / 3e-66 acclimation of photosynthesis to environment (.1.2) Lus10005377 [exp] 66 / 7e-15 AT5G38650 54 / 2e-10 Proteasome maturation factor UMP1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G249600 [exp] 185 / 2e-61 AT1G67250 186 / 7e-62 Proteasome maturation factor UMP1 (.1) Potri.017G111900 [exp] 184 / 5e-61 AT1G67250 187 / 2e-62 Proteasome maturation factor UMP1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05348 [flax] [poplar] UMP1 Proteasome maturation factor UMP1
Representative CDS sequence Show only first row Show all	>Lus10003077 pacid=23154514 polypeptide=Lus10003077 locus=Lus10003077.g ID=Lus10003077.BGIv1.0 annot-version=v1.0 ATGGAAGGAGCACCCACGACGTTAGCACAGAAAGCCGGAGAAATCGAGAAGGATCCGCTTCGATGCGGCCTCCATGGCGTTAAAAGCGACATCGTCGGAT CTCACCCTCTCCAAGCTGCATATGGATCTACTATTAGAACTCAAGAAGACATGAAGAGGAGAGTCCTTGCAAACACTTACGGATCCGCCTTCCCTGTGAA GATGGACCTGGAAAGGCAATTTCTTACCCGATTCCAGAGACCACCGGGTGCTATTCCTTCATCAATGCTTGGGTTGGAAGCCATGACTGGAAGCTTGGAT GATTTTGGTTTCGAGGATTATCTTAATGATCCTCGTGAATCTGAAGTCTATCGACCAGTGGACATGCACCATGGGTTGGAGGTTCACCTGGCCCTGTCCA AGGGACCGGTTCAACGTTCTTTCATCTGA
AA sequence Show only first row Show all	>Lus10003077 pacid=23154514 polypeptide=Lus10003077 locus=Lus10003077.g ID=Lus10003077.BGIv1.0 annot-version=v1.0 MEGAPTTLAQKAGEIEKDPLRCGLHGVKSDIVGSHPLQAAYGSTIRTQEDMKRRVLANTYGSAFPVKMDLERQFLTRFQRPPGAIPSSMLGLEAMTGSLD DFGFEDYLNDPRESEVYRPVDMHHGLEVHLALSKGPVQRSFI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38660		APE1	acclimation of photosynthesis ...		Lus10003077 [exp]	0	1
AT3G56740			Ubiquitin-associated (UBA) pro...		Lus10038976 [exp]	1.4	0.8988
AT5G19990		ATSUG1, RPT6A	regulatory particle triple-A A...		Lus10033055 [exp]	2.2	0.8807
AT5G47060			Protein of unknown function (D...		Lus10019494 [exp]	2.4	0.8934
AT2G20140		RPT2b	regulatory particle AAA-ATPase...		Lus10011901 [exp]	3.3	0.8395
AT2G27030		CAM5, CAM2, ACA...	calmodulin 5 (.1.2.3)		Lus10038981 [exp]	3.9	0.8842
AT2G28720			Histone superfamily protein (....		Lus10017456 [exp]	4.2	0.8267
AT1G04690		KV-BETA1, KAB1	potassium channel beta subunit...		Lus10023674 [exp]	4.5	0.8479
AT5G65430		14-3-3KAPPA, GF...	14-3-3 PROTEIN G-BOX FACTOR14 ...		Lus10035934 [exp]	6.0	0.8815
AT2G41150			unknown protein		Lus10022403 [exp]	6.0	0.8619
AT2G38760		ANN3, ANNAT3	annexin 3 (.1)		Lus10024172 [exp]	9.2	0.8604

Compare expression of checked genes

Lus10003077 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.