Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67260 102 / 1e-24 TCP TCP1 TCP family transcription factor (.1.2) AT1G68800 92 / 1e-20 TCP TCP12, BRC2, TCP18 BRANCHED 2, TCP domain protein 12 (.1) AT1G53230 84 / 7e-18 TCP TCP3 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1) AT3G15030 82 / 3e-17 TCP TCP4, MEE35 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) AT4G18390 79 / 3e-16 TCP TCP2 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) AT2G31070 79 / 3e-16 TCP TCP10 TCP domain protein 10 (.1) AT3G18550 79 / 4e-16 TCP AtBRC1, ATTCP18, TCP18, BRC1, TCP12 BRANCHED 1, TCP family transcription factor (.1.2) AT1G30210 77 / 6e-16 TCP ATTCP24, TCP24 TEOSINTE BRANCHED 1, cycloidea, and PCF family 24 (.1.2) AT5G60970 72 / 6e-14 TCP TCP5 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1) AT3G02150 71 / 1e-13 TCP TFPD, PTF1, TCP13 TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 13, plastid transcription factor 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034072 [exp] 255 / 1e-81 AT1G67260 100 / 4e-23 TCP family transcription factor (.1.2) Lus10035055 [exp] 90 / 3e-20 AT1G68800 102 / 7e-25 BRANCHED 2, TCP domain protein 12 (.1) Lus10021713 [exp] 89 / 1e-19 AT3G18550 107 / 2e-26 BRANCHED 1, TCP family transcription factor (.1.2) Lus10000463 [exp] 84 / 9e-18 AT3G15030 224 / 1e-69 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Lus10042962 [exp] 79 / 4e-16 AT1G68800 94 / 5e-21 BRANCHED 2, TCP domain protein 12 (.1) Lus10023297 [exp] 77 / 2e-15 AT4G18390 207 / 8e-63 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Lus10032465 [exp] 77 / 2e-15 AT1G68800 92 / 2e-20 BRANCHED 2, TCP domain protein 12 (.1) Lus10038512 [exp] 77 / 4e-15 AT4G18390 204 / 1e-60 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2) Lus10017856 [exp] 72 / 7e-14 AT5G60970 175 / 6e-52 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G112000 [exp] 94 / 2e-21 AT1G67260 111 / 1e-27 TCP family transcription factor (.1.2) Potri.010G130200 [exp] 88 / 4e-19 AT1G68800 121 / 2e-30 BRANCHED 2, TCP domain protein 12 (.1) Potri.008G115800 [exp] 87 / 9e-19 AT1G68800 119 / 8e-30 BRANCHED 2, TCP domain protein 12 (.1) Potri.013G119400 [exp] 83 / 1e-17 AT3G15030 243 / 4e-77 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.019G091300 [exp] 82 / 2e-17 AT3G15030 227 / 5e-71 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.015G050500 [exp] 82 / 3e-17 AT1G68800 86 / 2e-18 BRANCHED 2, TCP domain protein 12 (.1) Potri.012G059900 [exp] 81 / 1e-16 AT1G68800 84 / 6e-18 BRANCHED 2, TCP domain protein 12 (.1) Potri.001G375800 [exp] 81 / 1e-16 AT1G53230 279 / 1e-90 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 (.1) Potri.011G096600 [exp] 79 / 3e-16 AT3G15030 262 / 7e-84 maternal effect embryo arrest 35, TCP family transcription factor 4 (.1.2.3) Potri.011G083100 [exp] 79 / 5e-16 AT4G18390 150 / 5e-41 TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03634 [flax] [poplar] TCP TCP family transcription factor
Representative CDS sequence Show only first row Show all	>Lus10003078 pacid=23154512 polypeptide=Lus10003078 locus=Lus10003078.g ID=Lus10003078.BGIv1.0 annot-version=v1.0 ATGTCTGATCAAAGCCATGGCCTTTCTTCTTCACCCTACTTGACAATGTTTGACCCTGAAATCACCAACACCACCAGTAACAACAGTACTTACCTCTGCA GCCAATATCCTTATCCTCCAAACAACAACCATGGCCAGTTAATGACTTTGCCGTTCTTGCTCCCAACATACCCTTATCACATTACTTATCCAGACCCTCC TCCTCCTACTCCTCCTCACTCAGTCAGCTGTAATTTGGATAATAATGCAAATGAGATGATGATGCTGATGGGTAGCAGTGGTGGTAAGGAGATCAGGATG AATGTGAAGAAGAAGGAGAGGCACAGCAAGATAGAGACGGCAACAGGGGTGAGAGACAGGAGGGTAAGGCTGTCAATTGGTACATCGAGAAAGTTCTTTG ATTTGCAGGACATGCTTGGCTTTGACAAGCCTTCCAAGACACTTGACTGGCTCCTCTCTCATTCCGAGCCCGCCATCCACCGCCTCCAACAGCTCCAACG AAAACCCACTACTGGGGACATCATGGAGTTGGAGAATGAGGAGGGCGATGATGATGACGATAATGATGGTGATGGTGATCATGACCAAGAACACGAGGCG CTGCTGCTAAACCAGCACCTGCAGGAAATGGCAAGGGCGACAAGAACAAAAGACAGAAGCACCATCATGGCCAACGAACATCAACAAGAACCATTTGGCT TTGGAAGAGTAGTTTCCAACTCCAACAACTCCCTGTTCACTACTACTACTACTGCTGCTCCTGAGGATGAGTCATTCATGTTGATGAAGTGGAACCACCT TAAGCACCCTGCATCATCTTCATCATCATCATCATCTTTAACAACAACAACAACAATAAACCATGCCATCCCATCATCCATCTTCCCTCATCATCAGAAC ATATCAACTGCTTCTACGTGGGATATCAACGCTGCAACTGGATGTTACAGTGCACTCCTCTCGCAACGAAATGGACCAACTAGTCGCGAGAGGAGAGGGG AAGGGCGGGCCGGGTGA
AA sequence Show only first row Show all	>Lus10003078 pacid=23154512 polypeptide=Lus10003078 locus=Lus10003078.g ID=Lus10003078.BGIv1.0 annot-version=v1.0 MSDQSHGLSSSPYLTMFDPEITNTTSNNSTYLCSQYPYPPNNNHGQLMTLPFLLPTYPYHITYPDPPPPTPPHSVSCNLDNNANEMMMLMGSSGGKEIRM NVKKKERHSKIETATGVRDRRVRLSIGTSRKFFDLQDMLGFDKPSKTLDWLLSHSEPAIHRLQQLQRKPTTGDIMELENEEGDDDDDNDGDGDHDQEHEA LLLNQHLQEMARATRTKDRSTIMANEHQQEPFGFGRVVSNSNNSLFTTTTTAAPEDESFMLMKWNHLKHPASSSSSSSSLTTTTTINHAIPSSIFPHHQN ISTASTWDINAATGCYSALLSQRNGPTSRERRGEGRAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67260	TCP	TCP1	TCP family transcription facto...		Lus10003078 [exp]	0	1
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Lus10020123 [exp]	15.4	0.6987
AT3G57080		RPB5B, NRPE5	RNA POLYMERASE II FIFTH LARGES...		Lus10042019 [exp]	56.5	0.5748
AT1G24160			unknown protein		Lus10029213 [exp]	103.0	0.6387
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10043299 [exp]	107.5	0.6348
					Lus10026307 [exp]	258.7	0.5806

Compare expression of checked genes

Lus10003078 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.