Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18080 507 / 0 RACK1A_AT, ATARCA RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) AT1G48630 498 / 5e-179 RACK1B_AT receptor for activated C kinase 1B (.1) AT3G18130 494 / 2e-177 RACK1C_AT receptor for activated C kinase 1C (.1) AT3G49660 113 / 5e-29 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 100 / 4e-23 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 97 / 8e-22 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G67320 96 / 1e-21 HOS15 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) AT5G25150 94 / 4e-21 TAF5 TBP-associated factor 5 (.1) AT5G23430 93 / 1e-20 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G02730 91 / 1e-20 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017570 [exp] 587 / 0 AT1G18080 561 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10017569 [exp] 564 / 0 AT1G18080 546 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 114 / 3e-29 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10003487 [exp] 110 / 1e-27 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 104 / 1e-25 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 103 / 3e-25 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 98 / 2e-22 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10021059 [exp] 96 / 1e-21 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10011224 [exp] 95 / 3e-21 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G041600 [exp] 527 / 0 AT1G18080 537 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.012G052700 [exp] 524 / 0 AT1G18080 575 / 0.0 RECEPTOR FOR ACTIVATED C KINASE 1 A, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 109 / 2e-27 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 108 / 3e-27 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 108 / 4e-27 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G050100 [exp] 99 / 5e-23 AT5G67320 645 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.011G045500 [exp] 95 / 3e-21 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.005G144400 [exp] 94 / 3e-21 AT5G67320 671 / 0.0 high expression of osmotically responsive genes 15, WD-40 repeat family protein (.1) Potri.006G045800 [exp] 91 / 4e-20 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.018G020200 [exp] 89 / 3e-19 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10003080 pacid=23154522 polypeptide=Lus10003080 locus=Lus10003080.g ID=Lus10003080.BGIv1.0 annot-version=v1.0 ATGGCTGATGGATTGATCCTCCGCGGCACCATGCGTGCCCACACCGATCAGGTGACGGCAATCGCCACCCCGATCGACAACTCCGACATGATTGTCAGCT CCTCCCGCGACAAGTCCATCATCGTCTGGAATCTTACCAAGGAGGAGAACACCTACGGTGTGGCTCGCCGCCGCCTCACCGGCCACTCTGGCTTCGTCCA GGACGTCGTCCTGTCCTCCGACGGCCAGTTCGCTCTCTCTGGTGCCTGGGACGGCGAGCTCCGACTCTGGGATCTTGCCGCCGGCGTCTCTGCTCGCCGC TTCGTCGGTCACACCAAGGATGTTCTGTCCGTCGCTTTCTCGATCGACAACCGTCAGATCGTTTCTGCTTCACGCGACAAGAGTATCAAGCTGTGGAACA CTCTCGGAGAGTGCAAGTACACCATTCAGGACGGAGATGCCCACTCCGATTGGGTGAGCTGCGTCCGATTCAGTCCCAACACTCTCCAGCCAACCATTGT GTCTGCCTCCTGGGACCGTACCGTTAAGGTATGGAATTTGACGAACTGCAAGCTGAGATGCACTTTGGCTGGTCACGGTGGGAATGTGAACACTGTTGCT GTTTCACCTGATGGGTCCTTGTGTGCCAGCGGTGGAAAAGACAACGTGATATTGCTATGGGATTTGGCTGAGGGTAAGAAGCTGTACAATTTGGACGCTA ATGCTGCGATCCATGCTCTCTGCTTCAGTCCCAACAGGTACTGGCTGTGTGCTGCTACTGAGAACAGCATTAAGATCTGGGATTTGGAGAGCAAGAGCAT TGTGGAGGATTTGAAGGTCGATCTCAAGGCCGAGGCTGAGAAATCCGAGGGCGCAGCTCCCTCTTTGAAGAAGGTATATTTTCTTTGCTTCCACTTGCTA AGCTTAACCTTTAATATTGAACCTGCTATCTTTGATTATTTAGCTATCTGGTTTGTTCTGTTGCTATGA
AA sequence Show only first row Show all	>Lus10003080 pacid=23154522 polypeptide=Lus10003080 locus=Lus10003080.g ID=Lus10003080.BGIv1.0 annot-version=v1.0 MADGLILRGTMRAHTDQVTAIATPIDNSDMIVSSSRDKSIIVWNLTKEENTYGVARRRLTGHSGFVQDVVLSSDGQFALSGAWDGELRLWDLAAGVSARR FVGHTKDVLSVAFSIDNRQIVSASRDKSIKLWNTLGECKYTIQDGDAHSDWVSCVRFSPNTLQPTIVSASWDRTVKVWNLTNCKLRCTLAGHGGNVNTVA VSPDGSLCASGGKDNVILLWDLAEGKKLYNLDANAAIHALCFSPNRYWLCAATENSIKIWDLESKSIVEDLKVDLKAEAEKSEGAAPSLKKVYFLCFHLL SLTFNIEPAIFDYLAIWFVLLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18080		RACK1A_AT, ATAR...	RECEPTOR FOR ACTIVATED C KINAS...		Lus10003080 [exp]	0	1
AT1G61580		RPL3B, ARP2	ARABIDOPSIS RIBOSOMAL PROTEIN ...		Lus10037360 [exp]	1.7	0.9682
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10027192 [exp]	3.2	0.9600
AT3G09630			Ribosomal protein L4/L1 family...		Lus10019903 [exp]	3.5	0.9484
AT3G56150		ATTIF3C1, ATEIF...	eukaryotic translation initiat...		Lus10027702 [exp]	3.9	0.9554
AT5G20890			TCP-1/cpn60 chaperonin family ...		Lus10014511 [exp]	8.0	0.9324
AT2G05790			O-Glycosyl hydrolases family 1...		Lus10015151 [exp]	8.7	0.9236
AT1G56070		LOS1, AT1G56075...	LOW EXPRESSION OF OSMOTICALLY ...		Lus10031763 [exp]	9.2	0.9461
AT1G09620			ATP binding;leucine-tRNA ligas...		Lus10024704 [exp]	9.2	0.9323
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10010782 [exp]	10.7	0.9285
AT3G03060			P-loop containing nucleoside t...		Lus10031787 [exp]	11.0	0.9452

Compare expression of checked genes

Lus10003080 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.