Plant FIBer expression Database

Lus10003081 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G11340 143 / 1e-38 S-locus lectin protein kinase family protein (.1)
AT1G11410 139 / 5e-37 S-locus lectin protein kinase family protein (.1)
AT4G21380 117 / 2e-29 ARK3 receptor kinase 3 (.1)
AT1G65800 104 / 4e-25 ARK2 receptor kinase 2 (.1)
AT4G27300 99 / 4e-23 S-locus lectin protein kinase family protein (.1)
AT4G27290 98 / 8e-23 S-locus lectin protein kinase family protein (.1)
AT1G65790 94 / 2e-21 ARK1 receptor kinase 1 (.1)
AT1G61490 89 / 1e-19 S-locus lectin protein kinase family protein (.1)
AT1G11300 88 / 2e-19 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
AT1G61420 85 / 2e-18 S-locus lectin protein kinase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006745
[exp]
192 / 3e-56 AT1G11340 774 / 0.0 S-locus lectin protein kinase family protein (.1)
Lus10006746
[exp]
188 / 2e-54 AT1G11340 836 / 0.0 S-locus lectin protein kinase family protein (.1)
Lus10020052
[exp]
180 / 2e-51 AT1G11340 858 / 0.0 S-locus lectin protein kinase family protein (.1)
Lus10013244
[exp]
127 / 8e-33 AT1G11340 669 / 0.0 S-locus lectin protein kinase family protein (.1)
Lus10037865
[exp]
120 / 1e-30 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1)
Lus10038557
[exp]
119 / 3e-30 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1)
Lus10007611
[exp]
119 / 3e-30 AT1G11340 751 / 0.0 S-locus lectin protein kinase family protein (.1)
Lus10025512
[exp]
117 / 1e-29 AT1G11340 530 / 5e-177 S-locus lectin protein kinase family protein (.1)
Lus10024064
[exp]
109 / 7e-27 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.004G028701
[exp]
159 / 4e-44 AT1G11340 899 / 0.0 S-locus lectin protein kinase family protein (.1)
Potri.004G028466
[exp]
153 / 4e-42 AT1G11340 884 / 0.0 S-locus lectin protein kinase family protein (.1)
Potri.004G028600
[exp]
152 / 1e-41 AT1G11340 875 / 0.0 S-locus lectin protein kinase family protein (.1)
Potri.011G036400
[exp]
125 / 3e-32 AT1G11340 726 / 0.0 S-locus lectin protein kinase family protein (.1)
Potri.011G035700
[exp]
125 / 3e-32 AT1G11340 743 / 0.0 S-locus lectin protein kinase family protein (.1)
Potri.011G125100
[exp]
120 / 1e-30 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1)
Potri.011G036600
[exp]
117 / 1e-29 AT1G11340 741 / 0.0 S-locus lectin protein kinase family protein (.1)
Potri.011G036100
[exp]
117 / 2e-29 AT1G11340 719 / 0.0 S-locus lectin protein kinase family protein (.1)
Potri.011G037100
[exp]
115 / 5e-29 AT4G21380 982 / 0.0 receptor kinase 3 (.1)
Potri.011G035800
[exp]
115 / 1e-28 AT1G11340 705 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0168 PAN PF08276 PAN_2 PAN-like domain
Representative CDS sequence
>Lus10003081 pacid=23174310 polypeptide=Lus10003081 locus=Lus10003081.g ID=Lus10003081.BGIv1.0 annot-version=v1.0
ATGGCAGCTCCAGAAGTATCTGAAGTTTTTATCTCTAATAATGAGAAGTGGAAATGTTTGTATCATGCACCTTTGGATACTAGAAGTAAGAATATATTCA
ACTTCTGGAGAAACCTGAACAGATCATTTGAAAATGATTTCAAAATGGGGGTGCCCGAGATGGGCCATTGTATTTTCGATGACGAATTCATGAACAATAA
CGATGAGTGCGATACCTATCGCGTTTGCGGCCCGAACACAATTTGTGACCCATATGACCCGAACTCATTCTCTTATACGTGTCTTCTAGGGTTGGAGCCG
GCGTCGATAAGGGATTGGTCGGTGAGGAACGGTTCAGGAGGATGCGTTAGAACTAGGGGAGGGAAATCTACATGTCATAACAGGGAAGGGTTCGTTCCAT
TGAAAAATATGAAGGCACCAGACGCATCAACCGCACATGCAGATATAGGGATGAGTGTAAAATCATGTGAAGATGAATGTTTGAGAAATTGCTCGTGTGT
AGATTTAGTTGACGCTAGAATTTTTATCAAAGGTGGTCAAGATATTTATTTACGGGTTGACTCCGACCTGTTAGTTCGAACCAAAGTAAACCAAGGTCGA
TTCTTTTTGGACAGTACCGTCCCAAAAGAAGAATCGACAACAGGGGCAGAGAATGTAAATTTACATTTACCATTGTTCTCGCTGGATGAGATAGCTGCCG
CCACAAACAACTTCTCCGATGAGAATCAGCTCGGAGTGGGTGGCTTCGGTTCTGTCTACAAGGTTATAGGAAATGGAATGAAGATGAGCAACACAGCATG
TATAAGGAGCTAG
AA sequence
>Lus10003081 pacid=23174310 polypeptide=Lus10003081 locus=Lus10003081.g ID=Lus10003081.BGIv1.0 annot-version=v1.0
MAAPEVSEVFISNNEKWKCLYHAPLDTRSKNIFNFWRNLNRSFENDFKMGVPEMGHCIFDDEFMNNNDECDTYRVCGPNTICDPYDPNSFSYTCLLGLEP
ASIRDWSVRNGSGGCVRTRGGKSTCHNREGFVPLKNMKAPDASTAHADIGMSVKSCEDECLRNCSCVDLVDARIFIKGGQDIYLRVDSDLLVRTKVNQGR
FFLDSTVPKEESTTGAENVNLHLPLFSLDEIAAATNNFSDENQLGVGGFGSVYKVIGNGMKMSNTACIRS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G11340 S-locus lectin protein kinase ... Lus10003081
[exp]
0 1

Lus10003081 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.