Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54600 46 / 9e-06 Class I glutamine amidotransferase-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010964 [exp] 46 / 6e-06 AT3G02720 635 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10014721 [exp] 0 / 1 AT2G38860 490 / 2e-173 Class I glutamine amidotransferase-like superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G076000 [exp] 46 / 7e-06 AT3G02720 608 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.004G075900 [exp] 45 / 1e-05 AT3G02720 562 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.017G143880 [exp] 43 / 6e-05 AT3G02720 650 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.004G076200 [exp] 42 / 0.0001 AT3G02720 603 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003083 pacid=23174309 polypeptide=Lus10003083 locus=Lus10003083.g ID=Lus10003083.BGIv1.0 annot-version=v1.0 ATGTTTATTACCGAAGGCCGAAGGGAAGGATCGAGTCTCTACAACGTCCACAATTACAACACCACAAGAAGTGGTAACACTCATGAAGGCTTGCAAAACG CGACGGAGATACCCAATGCATCCGACAACTGCGCGACGAAATCGGAAAGCGCCGGCCACCCGCTCGCCGTCACCAACTTCCCGTGGGTCACGCACCCTTC CCCGTCCACCGCCACCTCACCACCGGCAACCTTCCCTCCCCCCGCCGGCCACCTTCACGATTACCTTCATCCCGTATGCGGCGGCGCACCTCTTTCCCTC CAGGGCATTGGCGGCGGCCAGGATCCATTTCCCCTGCCCGATTGCGCCGATGACCTTGTCCTTAGCGGCGAATTCCTTGACCATGGAAATCACCTTCTCG TTGGAGAGAAGAAGCTCCGGGGCCCGGCCTCCGGGCAAGACGAGGCAGTCGTACTTGTCGACATCGACGTCGTCCCAGTTGGCGGTGGCGACGAAGTTGT GGCCGCGCTTCTCGCTGCATACCTGGGCCCCTTCGTCGTCGTGGATGGCGGTGGGGCAGCTCTCTCCTCTTTTCTTTATTGGGCTCACTGCGTCCACGTG GCAGCCCAGGCCTTGTAG
AA sequence Show only first row Show all	>Lus10003083 pacid=23174309 polypeptide=Lus10003083 locus=Lus10003083.g ID=Lus10003083.BGIv1.0 annot-version=v1.0 MFITEGRREGSSLYNVHNYNTTRSGNTHEGLQNATEIPNASDNCATKSESAGHPLAVTNFPWVTHPSPSTATSPPATFPPPAGHLHDYLHPVCGGAPLSL QGIGGGQDPFPLPDCADDLVLSGEFLDHGNHLLVGEKKLRGPASGQDEAVVLVDIDVVPVGGGDEVVAALLAAYLGPFVVVDGGGAALSSFLYWAHCVHV AAQAL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10003083 [exp]	0	1
AT5G49510		PFD3, PDF3	prefoldin 3 (.1.2)		Lus10043046 [exp]	2.4	0.9277
AT2G38840			Guanylate-binding family prote...		Lus10003084 [exp]	7.5	0.9010
AT4G31750		WIN2	HOPW1-1-interacting 2 (.1)		Lus10026908 [exp]	11.4	0.9242
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10000038 [exp]	16.2	0.9244
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10003136 [exp]	17.2	0.9221
AT5G43540	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Lus10014755 [exp]	19.4	0.9236
AT2G33740		CUTA	Nitrogen regulatory PII-like, ...		Lus10014898 [exp]	21.2	0.9163
AT5G57620	MYB	ATMYB36	myb domain protein 36 (.1)		Lus10016139 [exp]	23.1	0.9170
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10040365 [exp]	25.1	0.9141
AT4G37320		CYP81D5	"cytochrome P450, family 81, s...		Lus10024078 [exp]	27.5	0.9216

Compare expression of checked genes

Lus10003083 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.