Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38840 650 / 0 Guanylate-binding family protein (.1) AT3G54600 142 / 3e-37 Class I glutamine amidotransferase-like superfamily protein (.1) AT2G38860 138 / 8e-37 YLS5 Class I glutamine amidotransferase-like superfamily protein (.1.2.3) AT3G02720 116 / 5e-28 Class I glutamine amidotransferase-like superfamily protein (.1) AT5G46070 44 / 0.0003 Guanylate-binding family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014720 [exp] 764 / 0 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1) Lus10024841 [exp] 761 / 0 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1) Lus10018755 [exp] 761 / 0 AT2G38840 989 / 0.0 Guanylate-binding family protein (.1) Lus10014721 [exp] 225 / 7e-68 AT2G38860 490 / 2e-173 Class I glutamine amidotransferase-like superfamily protein (.1.2.3) Lus10010964 [exp] 118 / 1e-28 AT3G02720 635 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10031360 [exp] 116 / 4e-28 AT3G02720 624 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Lus10003083 [exp] 74 / 6e-15 ND 173 / 2e-52 Lus10015390 [exp] 52 / 9e-07 AT5G46070 1392 / 0.0 Guanylate-binding family protein (.1) Lus10013965 [exp] 50 / 4e-06 AT5G46070 1390 / 0.0 Guanylate-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G046000 [exp] 701 / 0 AT2G38840 1011 / 0.0 Guanylate-binding family protein (.1) Potri.005G217300 [exp] 676 / 0 AT2G38840 960 / 0.0 Guanylate-binding family protein (.1) Potri.017G143880 [exp] 117 / 2e-28 AT3G02720 650 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.017G143940 [exp] 113 / 6e-27 AT3G02720 609 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.004G076000 [exp] 113 / 6e-27 AT3G02720 608 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.004G076200 [exp] 112 / 1e-26 AT3G02720 603 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.004G075900 [exp] 111 / 1e-26 AT3G02720 562 / 0.0 Class I glutamine amidotransferase-like superfamily protein (.1) Potri.017G016800 [exp] 44 / 0.0003 AT5G46070 928 / 0.0 Guanylate-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02841 [flax] [poplar] GBP_C Guanylate-binding protein, C-terminal domain CL0014 [flax] [poplar] Glutaminase_I PF01965 [flax] [poplar] DJ-1_PfpI DJ-1/PfpI family
Representative CDS sequence Show only first row Show all	>Lus10003084 pacid=23174297 polypeptide=Lus10003084 locus=Lus10003084.g ID=Lus10003084.BGIv1.0 annot-version=v1.0 ATGGAGAGCAGAGTGAAGGGTGAAGATGTTGCTTTTGTACCTGCAAAACTTCTTTGGCTTATCCAACGAGATTTTCTACAGGGGAAATCGGTACAGGAGA TGGTGAATGAAGCCCTTCAACGTGTACCAAATCAAGATGGGGACAGAAATATTGATCAGGTGAATCAGATCCGAGAGTCACTGGCTATAATGGGTGATAA CAGCACTGCTTTTAGCTTGCCACAGCCTCATCTTCAGCGGACAAAGCTTTGCGACTTGAAGGACAGCGATCTTGAGCAACCATACGTTTCAAGAAGGGAA AAATTGAAAGAACTTGTTTCCAGCATCATTCGTCCCAAGATTGTGCAGGGTAAATCTCTGAATGGAGAGGAATTTGTAGCATTCCTTGAGCAGATTCTTG AAGCCTTGAATAAAGGGGAGATACCATCAACTGGATCTCTTGTGGAGGTTTTCAACAAGGCTATCCTTGAGAGATGTTTGAAAATATACAGTGAACCGAT GGCTAAATTAATGTTGCCACTAACGGAGGAGGCTGTGCAAGATGCCCATGGAAGGTCAAGAGAAACAGCAATGAAAGTTTTTGATGAACAACATTTTGGT CGTAATCATGCCAAGAAATCTGTGATGCAACTGGATGAAGAAATTGACAAGGTTTATAAGCACATCGTTATGGCGAACGAATATCAGTCTGCAAAACTCT GTGAGGCGCTATACTCTACATGTGAGGACAAAATGGACCAACTTCAAGTTCTAAGACTTCCTTCCATGGCCAAATTCAATGCCGGGTTCCTACAATGCAA TCGAAGTTTTGAGCACGAGTGTGTTGGACCTTCGAAAGCAGCTTATGAGACTCGCATGATGAAGATGATGGGGAAGTCGAAATCTCAATTCATAAAGGAA TACAACCATAGGCTGTTCAACTGGCTGGTGACCTTCTCGCTGGTGATGGTGGTGGTAGGACGGTTCGTAATAAAGTTCATTATGGTGGAGATGGGAGCGT GGATCCTTTTCATCTTCCTAGAGACGTACACTCGAATGTTCTGGTCAGCAGAGTCGCTTTACTACAACCCGGCTTGGCATTTCATAGTAGCAACCTGGGA AACAGTTGTTTACAGCCCCCTACTTGATTTGGACAGATGGGCGATACCGGTGGTGTTTGTAGTAGCGATGTTGCTGCTATATTGGAGAAAATTCATATTA TTTTTCAAGTGGTTGGGACTGGAGCAGAGGAATCATCCTCTGTTTGCCTGCAACCTTTCCTCTATATATAAACCCATCCTCCTTTCGTTTCTTTCCTCTT TCGTCAAACCACCAGCTCATTTCAATCAAGTAACACCTTCCGATCCAACCATCCAAATGGGTTCCCTGGCTCACAAGTCTGCTCTGATCATATGCGGCGA CTACATGGAGGACTATGAAATCGCAGTCCCCTTCTTCGTCCTCCGTGCCTTCGGCGTCCGCGTTGATTGCGTCTCCCCCGGCAAGCTCTCCGGCCAAAAA TGCTTCACCGGCGTCCATGACTTTATGGGCTTCGAGCTGTACACAGAGCTGCCCGGGCATTTCTTCACCCTGAACGCCAACTACTCACAAATAAACCCAG ACTCCTACGATGCCCTCATCATCCCCGGCGGGAGGTTCACGGAGCTCCTCAGCACAGACGACAAGTTGGTTGAGAGCGTTAGGACAACCTGA
AA sequence Show only first row Show all	>Lus10003084 pacid=23174297 polypeptide=Lus10003084 locus=Lus10003084.g ID=Lus10003084.BGIv1.0 annot-version=v1.0 MESRVKGEDVAFVPAKLLWLIQRDFLQGKSVQEMVNEALQRVPNQDGDRNIDQVNQIRESLAIMGDNSTAFSLPQPHLQRTKLCDLKDSDLEQPYVSRRE KLKELVSSIIRPKIVQGKSLNGEEFVAFLEQILEALNKGEIPSTGSLVEVFNKAILERCLKIYSEPMAKLMLPLTEEAVQDAHGRSRETAMKVFDEQHFG RNHAKKSVMQLDEEIDKVYKHIVMANEYQSAKLCEALYSTCEDKMDQLQVLRLPSMAKFNAGFLQCNRSFEHECVGPSKAAYETRMMKMMGKSKSQFIKE YNHRLFNWLVTFSLVMVVVGRFVIKFIMVEMGAWILFIFLETYTRMFWSAESLYYNPAWHFIVATWETVVYSPLLDLDRWAIPVVFVVAMLLLYWRKFIL FFKWLGLEQRNHPLFACNLSSIYKPILLSFLSSFVKPPAHFNQVTPSDPTIQMGSLAHKSALIICGDYMEDYEIAVPFFVLRAFGVRVDCVSPGKLSGQK CFTGVHDFMGFELYTELPGHFFTLNANYSQINPDSYDALIIPGGRFTELLSTDDKLVESVRTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38840			Guanylate-binding family prote...		Lus10003084 [exp]	0	1
					Lus10003083 [exp]	7.5	0.9010
					Lus10012330 [exp]	20.6	0.8464
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Lus10003136 [exp]	22.0	0.8907
AT1G30540			Actin-like ATPase superfamily ...		Lus10017642 [exp]	42.0	0.8545
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Lus10023461 [exp]	45.1	0.8173
AT5G61680			Pectin lyase-like superfamily ...		Lus10034893 [exp]	50.0	0.8478
AT1G02260			Divalent ion symporter (.1)		Lus10027497 [exp]	51.8	0.8700
AT1G62422			unknown protein		Lus10031521 [exp]	71.3	0.8670
AT5G57240		ORP4C	OSBP(oxysterol binding protein...		Lus10021603 [exp]	72.6	0.8655
AT1G09440			Protein kinase superfamily pro...		Lus10030863 [exp]	108.1	0.8591

Compare expression of checked genes

Lus10003084 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.