Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38840 299 / 5e-99 Guanylate-binding family protein (.1) AT5G46070 101 / 9e-25 Guanylate-binding family protein (.1) AT1G03830 71 / 4e-14 guanylate-binding family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014720 [exp] 360 / 9e-123 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1) Lus10018755 [exp] 323 / 3e-108 AT2G38840 989 / 0.0 Guanylate-binding family protein (.1) Lus10024841 [exp] 297 / 1e-98 AT2G38840 976 / 0.0 Guanylate-binding family protein (.1) Lus10015390 [exp] 104 / 1e-25 AT5G46070 1392 / 0.0 Guanylate-binding family protein (.1) Lus10025456 [exp] 102 / 6e-25 AT5G46070 1401 / 0.0 Guanylate-binding family protein (.1) Lus10013965 [exp] 101 / 9e-25 AT5G46070 1390 / 0.0 Guanylate-binding family protein (.1) Lus10015327 [exp] 100 / 2e-24 AT5G46070 1415 / 0.0 Guanylate-binding family protein (.1) Lus10018638 [exp] 66 / 1e-12 AT5G46070 526 / 2e-169 Guanylate-binding family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G046000 [exp] 303 / 9e-101 AT2G38840 1011 / 0.0 Guanylate-binding family protein (.1) Potri.005G217300 [exp] 297 / 3e-98 AT2G38840 960 / 0.0 Guanylate-binding family protein (.1) Potri.004G049400 [exp] 102 / 3e-25 AT5G46070 1334 / 0.0 Guanylate-binding family protein (.1) Potri.017G016800 [exp] 101 / 1e-24 AT5G46070 928 / 0.0 Guanylate-binding family protein (.1) Potri.011G058500 [exp] 99 / 8e-24 AT5G46070 1355 / 0.0 Guanylate-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF02263 [flax] [poplar] GBP Guanylate-binding protein, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10003085 pacid=23174301 polypeptide=Lus10003085 locus=Lus10003085.g ID=Lus10003085.BGIv1.0 annot-version=v1.0 ATGACGAATTGTCGATGGAATTTGTTCGCTTTGCAGCTTCCTCTCCTTCTCGTCCTGTGTCTCTTGCCATCTCCGTCTCGCTCGATTGATGACTTCCACC AAGCGTTTCCTATTGTTGAACCTGCTCCAGGACATACAAAACTCCGTCTTTCAAGTGAGGGCTTGGAAGCTATAAGACGAATAAAAAATCCAATTGCTGC TGTTGCGGTGATTGGTCCATATCGCTCTGGAAAATCCTTTTTGCTTAATCAACTTCTTTCCCTTTCTTGTGATGATGGCTTCGGGGTGGGACATATGCGT GATACAAAGACAAAAGGAATATGGGTATGGGGAACCCCGATAGAATTAGACGTCAACGGTCAAAAAACTTCTATCCTGTACTTAGACACTGAAGGATTTG AAAGTGTTGGGAAGTCAAATGTTTATGATGATAGGATTTTCGCTCTTGCAACTGTCATGAGTTCTGTGCTTATCTATAATCTTCCTGAAACGATCCGGGA GGCTGACATTTCTCGGCTGTCATTTGCCGTTGAACTTGCTGAAGAGTTCTATGGAAGGTTTACACTTCTATCACATGGTGAAGTAATATGTGAATTCCTC CCTTTGTGA
AA sequence Show only first row Show all	>Lus10003085 pacid=23174301 polypeptide=Lus10003085 locus=Lus10003085.g ID=Lus10003085.BGIv1.0 annot-version=v1.0 MTNCRWNLFALQLPLLLVLCLLPSPSRSIDDFHQAFPIVEPAPGHTKLRLSSEGLEAIRRIKNPIAAVAVIGPYRSGKSFLLNQLLSLSCDDGFGVGHMR DTKTKGIWVWGTPIELDVNGQKTSILYLDTEGFESVGKSNVYDDRIFALATVMSSVLIYNLPETIREADISRLSFAVELAEEFYGRFTLLSHGEVICEFL PL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38840			Guanylate-binding family prote...		Lus10003085 [exp]	0	1
AT5G11700			unknown protein		Lus10005497 [exp]	9.1	0.8725
AT5G23630		PDR2, MIA	PI DEFICIENCY RESPONSE 2, MALE...		Lus10029800 [exp]	14.8	0.8793
AT1G73080		ATPEPR1, PEPR1	PEP1 receptor 1 (.1)		Lus10008849 [exp]	20.0	0.8355
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Lus10011195 [exp]	22.6	0.8604
AT5G55390		EDM2	ENHANCED DOWNY MILDEW 2 (.1.2)		Lus10038453 [exp]	25.1	0.8617
AT1G65580		FRA3	FRAGILE FIBER3, Endonuclease/e...		Lus10024113 [exp]	26.5	0.8643
AT3G08850		ATRAPTOR1B, RAP...	HEAT repeat ;WD domain, G-beta...		Lus10014157 [exp]	28.8	0.8718
AT2G30800		ATVT-1, HVT1	helicase in vascular tissue an...		Lus10001415 [exp]	33.2	0.8705
AT5G23630		PDR2, MIA	PI DEFICIENCY RESPONSE 2, MALE...		Lus10020724 [exp]	48.6	0.8586
AT1G08420		BSL2	BRI1 suppressor 1 (BSU1)-like ...		Lus10008369 [exp]	56.5	0.8518

Compare expression of checked genes

Lus10003085 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.