Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71790 392 / 2e-139 Subunits of heterodimeric actin filament capping protein Capz superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007185 [exp] 474 / 9e-172 AT1G71790 432 / 3e-155 Subunits of heterodimeric actin filament capping protein Capz superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G199600 [exp] 410 / 1e-146 AT1G71790 426 / 8e-153 Subunits of heterodimeric actin filament capping protein Capz superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01115 [flax] [poplar] F_actin_cap_B F-actin capping protein, beta subunit
Representative CDS sequence Show only first row Show all	>Lus10003086 pacid=23174307 polypeptide=Lus10003086 locus=Lus10003086.g ID=Lus10003086.BGIv1.0 annot-version=v1.0 ATGGAAGCAGCGTTGGGATTGATGAGAAGGATACCTCCTAAGCATTCCGTCACCGCGCTCTCGGCTCTTGTCAGCCTCTTGCCTCACCACTCCTCCGATC TCCTCTCCCAAGTCGATCAGCCCCTTCAGGTTTTATGCGATTCCGATAGTGGAAAGGAGTTCATACTGTGCGAGTACAACAGAGATGCTGATTCTTACAG GTCACCATGGTCAAACAAATACCATCCGGCACTGGATGATGCACTCTATCCTTCTGATGGTCTGAGGAAACTAGAGATTGAAGCGAATGAAGTCTTTGCC ATTTATCGTGACCAGTATTATGAAGGTGGCATCTCATCAGTCTACCTTTGGGAAGATAACAATGAAGGTTTTGTAGCCTGTTTTCTGATAAAGAAAGATG GAGCTAGGACAGCGCATGGAAGAAGGGGATACTTGCAGGAGGGGCTGTGGGAAGCCATTCATGTCATTGAGGTGGGACCAGAAGATGAAAAGACTCGTTA TTGCTTAACCAGCACGGTAATGCTGTCACTGACCACAGATAAAGAATCATCTGGGACATTTAAACTTTCAGGATCTCTTAGACGGCAGATGAAGATGGAT CTACCATTGGCTGATGGTCACATTTGCAACATGGGAAAGATGATAGAGGAGATGGAGGGGAAACTAAGAAACTCTCTGGATCAGGTTTATTTCGGGAAGA CGAAAGAGATGGTTTGCACTTTGCGACCACCATCAGAAGTGGTGATGAGATTGCCAGACAGCAGCAGCAGCAGCATGAGATGA
AA sequence Show only first row Show all	>Lus10003086 pacid=23174307 polypeptide=Lus10003086 locus=Lus10003086.g ID=Lus10003086.BGIv1.0 annot-version=v1.0 MEAALGLMRRIPPKHSVTALSALVSLLPHHSSDLLSQVDQPLQVLCDSDSGKEFILCEYNRDADSYRSPWSNKYHPALDDALYPSDGLRKLEIEANEVFA IYRDQYYEGGISSVYLWEDNNEGFVACFLIKKDGARTAHGRRGYLQEGLWEAIHVIEVGPEDEKTRYCLTSTVMLSLTTDKESSGTFKLSGSLRRQMKMD LPLADGHICNMGKMIEEMEGKLRNSLDQVYFGKTKEMVCTLRPPSEVVMRLPDSSSSSMR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G71790			Subunits of heterodimeric acti...		Lus10003086 [exp]	0	1
AT5G01010			unknown protein		Lus10029706 [exp]	1.7	0.8792
AT1G68370		ARG1	ALTERED RESPONSE TO GRAVITY 1,...		Lus10034344 [exp]	6.9	0.8751
AT5G52580			RabGAP/TBC domain-containing p...		Lus10027697 [exp]	9.9	0.8546
AT3G24820			BSD domain-containing protein ...		Lus10038170 [exp]	14.9	0.7764
AT4G21470		ATFMN/FHY	riboflavin kinase/FMN hydrolas...		Lus10018906 [exp]	15.2	0.8589
AT1G60995			unknown protein		Lus10014638 [exp]	15.4	0.8766
AT5G01010			unknown protein		Lus10042743 [exp]	15.5	0.8763
AT4G14340		CKL11, CKI1	CASEIN KINASE I-LIKE 11, casei...		Lus10021175 [exp]	15.5	0.8750
AT3G55020			Ypt/Rab-GAP domain of gyp1p su...		Lus10036500 [exp]	16.4	0.8227
AT5G62610	bHLH	bHLH079	basic helix-loop-helix (bHLH) ...		Lus10036659 [exp]	17.1	0.8658

Compare expression of checked genes

Lus10003086 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.