Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G22970 318 / 1e-106 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT2G38820 308 / 2e-103 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) AT4G14620 286 / 2e-94 Protein of unknown function (DUF506) (.1) AT3G54550 206 / 5e-64 Protein of unknown function (DUF506) (.1) AT3G25240 134 / 1e-36 Protein of unknown function (DUF506) (.1) AT3G07350 130 / 4e-35 Protein of unknown function (DUF506) (.1) AT2G39650 125 / 6e-33 Protein of unknown function (DUF506) (.1) AT4G32480 120 / 3e-31 Protein of unknown function (DUF506) (.1) AT1G62420 114 / 3e-29 Protein of unknown function (DUF506) (.1) AT2G20670 113 / 1e-28 Protein of unknown function (DUF506) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014718 [exp] 671 / 0 AT3G22970 327 / 3e-110 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10024840 [exp] 504 / 7e-180 AT3G22970 324 / 4e-109 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10018754 [exp] 496 / 3e-176 AT2G38820 319 / 6e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10039397 [exp] 325 / 8e-108 AT3G22970 362 / 2e-122 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10006634 [exp] 311 / 3e-103 AT3G22970 367 / 2e-125 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Lus10023412 [exp] 135 / 1e-36 AT2G39650 273 / 2e-91 Protein of unknown function (DUF506) (.1) Lus10035594 [exp] 135 / 2e-36 AT1G62420 179 / 3e-54 Protein of unknown function (DUF506) (.1) Lus10003174 [exp] 133 / 6e-36 AT3G07350 253 / 2e-83 Protein of unknown function (DUF506) (.1) Lus10000956 [exp] 131 / 6e-36 AT2G39650 266 / 1e-89 Protein of unknown function (DUF506) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G046300 [exp] 456 / 7e-161 AT3G22970 322 / 5e-108 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G216900 [exp] 442 / 2e-155 AT3G22970 320 / 2e-107 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.008G159800 [exp] 356 / 2e-121 AT3G22970 350 / 3e-119 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.010G080600 [exp] 339 / 1e-114 AT3G22970 371 / 3e-127 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.005G058200 [exp] 137 / 4e-38 AT2G38820 154 / 3e-45 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.004G001400 [exp] 135 / 6e-37 AT1G62420 209 / 2e-66 Protein of unknown function (DUF506) (.1) Potri.007G109700 [exp] 132 / 4e-36 AT2G38820 147 / 1e-42 Protein of unknown function (DUF506) (.1), Protein of unknown function (DUF506) (.2) Potri.008G056100 [exp] 130 / 6e-35 AT2G39650 293 / 3e-99 Protein of unknown function (DUF506) (.1) Potri.005G188100 [exp] 128 / 6e-35 AT1G77160 169 / 8e-52 Protein of unknown function (DUF506) (.1) Potri.010G203700 [exp] 128 / 4e-34 AT2G39650 287 / 9e-97 Protein of unknown function (DUF506) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04720 [flax] [poplar] PDDEXK_6 PDDEXK-like family of unknown function
Representative CDS sequence Show only first row Show all	>Lus10003087 pacid=23174304 polypeptide=Lus10003087 locus=Lus10003087.g ID=Lus10003087.BGIv1.0 annot-version=v1.0 ATGCCTCTGACGATGAAGATTCAGCCGATTGACTCCCACGCCCCTGAGGAGCGCATTCGGATTGAGCCAGTGAAGCCGGTGGTGAAATCGAGACTGAAGC GGCTGTTCGAGCGCCAGTTTCTGAGGAGCTCCGCCGCTGCTGAGAAAGTCGGTGCCGTTGACGAGCCACAATCCAACGGAGAGCTTGAGCCAAGTTCCCT GTGCTTGGCAAACATGGTGCAGAGCTTTATCGAGGATAACAACGAGAAGCAGCACTCGGTCAAGTGTGGCCGCAGCTGCTTTAACGGGAACTGCGACGAT AGCTCCGAGGACGAATTTGACTATTTTGGAACAGCTGGTTTCGGCGACTTGAATCGTTCTTCTTTTGGTGAAGCGTGTGAAGTTCTGAAGAGTTTGGTGC CTTGTTCTACCGTCTTTGAAAGGAATCTACTGGCGGACACTGCGAAGATCGTTGATAATAAGATCAGCAAGCGCAATGACGAATTTTTCAGGAAGACCGT CACTGATGGATTGTTGACTCTCGGCTACGATTGTTCAATCTGCAAGTCCCGATGGGAGAAATCCTCGTCTCATCCTGCCGGGGAATACGAATACATAGAT GTCATCATGCCAGGAGGCGAGAGGCTTCTAGTCGACATTGATTTCCGATCGGAATTTGAGATTGCTAGATCGACAAAAGCCTACAAACTAATCCTCCAGA CGCTACCACAGATATTCGTCGGGAATGCAGATCGTCTCCAGAAGATCGTTGCAGTTGTATCCGAGGCAGCTAAGCAGAGCATGAAGAAGAAGGGAATGCA CGTTCCGCCATGGAGGAAAGTCGAGTACGTCAAAGCTAAATGGCTCTCTCCTTACACTAGAACTACTGCACAATCACCCGTTGCATGCGATCAGAAGAAG GATCAAGTTCTGGTTCAAAATGGGAGTTCTAAGTTTGAAGTGACTTGTGAACAACATATCTTGGAGGTAGCTGAGCCTCATCCCAAGTCTCTTTTTGATG AAGATAGTGATGCTGAAGAAGAAGAGAAGGCATTGGCCACGGTGGTTACGAAATGGAAGCCACCTGAGTCTCTGCCAAAGAGTTTGAGCTTTCAGACGAG AGCTAAGGTGGTTACCGGTTTGGCTTCTGTGATTGCAGACTAG
AA sequence Show only first row Show all	>Lus10003087 pacid=23174304 polypeptide=Lus10003087 locus=Lus10003087.g ID=Lus10003087.BGIv1.0 annot-version=v1.0 MPLTMKIQPIDSHAPEERIRIEPVKPVVKSRLKRLFERQFLRSSAAAEKVGAVDEPQSNGELEPSSLCLANMVQSFIEDNNEKQHSVKCGRSCFNGNCDD SSEDEFDYFGTAGFGDLNRSSFGEACEVLKSLVPCSTVFERNLLADTAKIVDNKISKRNDEFFRKTVTDGLLTLGYDCSICKSRWEKSSSHPAGEYEYID VIMPGGERLLVDIDFRSEFEIARSTKAYKLILQTLPQIFVGNADRLQKIVAVVSEAAKQSMKKKGMHVPPWRKVEYVKAKWLSPYTRTTAQSPVACDQKK DQVLVQNGSSKFEVTCEQHILEVAEPHPKSLFDEDSDAEEEEKALATVVTKWKPPESLPKSLSFQTRAKVVTGLASVIAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G22970			Protein of unknown function (D...		Lus10003087 [exp]	0	1
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10034499 [exp]	2.8	0.8805
AT2G46690			SAUR-like auxin-responsive pro...		Lus10010110 [exp]	4.1	0.9188
AT5G67150			HXXXD-type acyl-transferase fa...		Lus10041591 [exp]	4.7	0.8514
AT4G28290			unknown protein		Lus10033693 [exp]	5.5	0.8520
AT5G16200			50S ribosomal protein-related ...		Lus10028496 [exp]	7.9	0.8628
AT3G22970			Protein of unknown function (D...		Lus10014718 [exp]	8.5	0.8546
AT3G45970		ATHEXPBETA2.1, ...	EXPANSIN L1, expansin-like A1 ...		Lus10023968 [exp]	11.1	0.8104
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Lus10014132 [exp]	13.2	0.8713
AT4G20880			ethylene-responsive nuclear pr...		Lus10038459 [exp]	13.5	0.7888
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Lus10029163 [exp]	14.9	0.7854

Compare expression of checked genes

Lus10003087 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.