Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38810 197 / 4e-66 HTA8 histone H2A 8 (.1.2.3) AT3G54560 194 / 3e-65 HTA11 histone H2A 11 (.1) AT1G52740 183 / 7e-61 HTA9 histone H2A protein 9 (.1) AT4G13570 147 / 1e-46 HTA4 histone H2A 4 (.1.2) AT1G51060 119 / 3e-35 HTA10 histone H2A 10 (.1) AT1G54690 117 / 1e-34 HTA3 ,G-H2AX ,GAMMA-H2AX ,H2AXB histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) AT1G08880 117 / 1e-34 HTA5 ,G-H2AX ,GAMMA-H2AX ,H2AXA histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) AT4G27230 116 / 2e-34 HTA2 histone H2A 2 (.1.2) AT5G54640 116 / 3e-34 ATHTA1, HTA1, RAT5 RESISTANT TO AGROBACTERIUM TRANSFORMATION 5, histone H2A 1, Histone superfamily protein (.1) AT3G20670 116 / 3e-34 HTA13 histone H2A 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014717 [exp] 204 / 4e-69 AT3G54560 233 / 1e-80 histone H2A 11 (.1) Lus10024838 [exp] 202 / 5e-68 AT3G54560 227 / 5e-78 histone H2A 11 (.1) Lus10018753 [exp] 200 / 3e-67 AT3G54560 225 / 3e-77 histone H2A 11 (.1) Lus10019449 [exp] 186 / 8e-62 AT1G52740 228 / 2e-78 histone H2A protein 9 (.1) Lus10043301 [exp] 186 / 9e-62 AT1G52740 227 / 4e-78 histone H2A protein 9 (.1) Lus10019447 [exp] 186 / 9e-62 AT1G52740 227 / 4e-78 histone H2A protein 9 (.1) Lus10028044 [exp] 119 / 4e-35 AT1G08880 238 / 4e-82 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1) Lus10003750 [exp] 119 / 4e-35 AT1G54690 239 / 7e-83 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Lus10039691 [exp] 118 / 5e-35 AT1G54690 249 / 1e-86 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G216600 [exp] 202 / 3e-68 AT3G54560 209 / 5e-71 histone H2A 11 (.1) Potri.002G046400 [exp] 202 / 4e-68 AT3G54560 209 / 4e-71 histone H2A 11 (.1) Potri.018G032000 [exp] 187 / 2e-62 AT1G52740 223 / 1e-76 histone H2A protein 9 (.1) Potri.018G032100 [exp] 187 / 3e-62 AT1G52740 223 / 1e-76 histone H2A protein 9 (.1) Potri.006G249400 [exp] 186 / 4e-62 AT1G52740 224 / 4e-77 histone H2A protein 9 (.1) Potri.006G249300 [exp] 186 / 4e-62 AT1G52740 224 / 4e-77 histone H2A protein 9 (.1) Potri.013G028900 [exp] 119 / 2e-35 AT1G54690 220 / 4e-75 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Potri.005G040800 [exp] 118 / 7e-35 AT1G54690 221 / 2e-75 histone H2A 3, GAMMA H2AX, gamma histone variant H2AX (.1) Potri.011G131400 [exp] 117 / 7e-35 AT1G51060 200 / 1e-67 histone H2A 10 (.1) Potri.004G031300 [exp] 117 / 1e-34 AT1G08880 150 / 6e-48 histone H2A 5, gamma histone variant H2AX, GAMMA H2AX, Histone superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0012 [flax] [poplar] Histone PF00125 [flax] [poplar] Histone Core histone H2A/H2B/H3/H4
Representative CDS sequence Show only first row Show all	>Lus10003088 pacid=23174303 polypeptide=Lus10003088 locus=Lus10003088.g ID=Lus10003088.BGIv1.0 annot-version=v1.0 ATGGCAGGGAAAGGAGGGAAAGGGCTTGTGGCTGCCAAGACTACTGCAGCTAACAAGGATAAGGATAAGGACAAGAAGAGACCTACCTCCAGATCTTCCC GTGCTGGCATCCAGTTTCCAGTGGGTAGGATTCATCGTCATCTAAAGCAAAGGATTGCAGCCCACGGCCGAGTCGGGGCCACTGCTGCGGTATACTTGGC TTCAATTCTGGAGTACTTGACTGCTGAGGTGCTCGAGCTTGCTGGGAATGCAAGTAAGGATTTGAAAGTGAAGAGAATCACACCAAGGCATCTGCAGCTG GCCATTAGAGGAGATGAGGAACTCGATACTCTGATCAAGGGCACCATTGCCGGAGGAGGTGTCATCCCTCACATCCACAAGTCTCTCATCAACAAGACCA CCAAGGACTGA
AA sequence Show only first row Show all	>Lus10003088 pacid=23174303 polypeptide=Lus10003088 locus=Lus10003088.g ID=Lus10003088.BGIv1.0 annot-version=v1.0 MAGKGGKGLVAAKTTAANKDKDKDKKRPTSRSSRAGIQFPVGRIHRHLKQRIAAHGRVGATAAVYLASILEYLTAEVLELAGNASKDLKVKRITPRHLQL AIRGDEELDTLIKGTIAGGGVIPHIHKSLINKTTKD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10003088 [exp]	0	1
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10020580 [exp]	1.4	0.8700
AT2G30620			winged-helix DNA-binding trans...		Lus10022001 [exp]	3.2	0.8555
AT3G24150			unknown protein		Lus10043262 [exp]	7.1	0.7872
AT4G39200			Ribosomal protein S25 family p...		Lus10035060 [exp]	8.2	0.8348
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10034076 [exp]	10.1	0.8332
AT4G18100			Ribosomal protein L32e (.1)		Lus10007541 [exp]	11.4	0.8107
AT2G47640			Small nuclear ribonucleoprotei...		Lus10030367 [exp]	17.4	0.8280
AT2G47640			Small nuclear ribonucleoprotei...		Lus10007876 [exp]	17.6	0.8197
AT3G27360			Histone superfamily protein (....		Lus10031252 [exp]	18.1	0.8381
AT1G14620		XTR2, EXGT-A2, ...	decoy (.1.2)		Lus10012875 [exp]	18.9	0.8019

Compare expression of checked genes

Lus10003088 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.