Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53840 54 / 3e-08 F-box/RNI-like/FBD-like domains-containing protein (.1) AT1G80960 50 / 4e-07 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) AT1G78730 46 / 1e-05 FBD, F-box, Skp2-like and Leucine Rich Repeat domains containing protein (.1) AT1G67390 44 / 3e-05 F-box family protein (.1) AT2G42730 44 / 4e-05 F-box family protein (.1.2) AT5G03100 42 / 0.0001 F-box/RNI-like superfamily protein (.1) AT1G13570 42 / 0.0002 F-box/RNI-like superfamily protein (.1) AT1G55660 41 / 0.0004 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) AT1G60410 41 / 0.0004 F-box family protein (.1) AT4G00315 41 / 0.0004 F-box/RNI-like/FBD-like domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028602 [exp] 187 / 4e-58 AT1G80960 50 / 1e-06 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Lus10018863 [exp] 173 / 2e-53 AT5G44950 62 / 1e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10028722 [exp] 143 / 7e-40 AT2G42730 76 / 1e-14 F-box family protein (.1.2) Lus10028558 [exp] 112 / 3e-31 AT3G51530 56 / 4e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10004525 [exp] 118 / 9e-31 AT4G01840 402 / 3e-137 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Lus10028721 [exp] 103 / 5e-28 AT5G53840 56 / 5e-10 F-box/RNI-like/FBD-like domains-containing protein (.1) Lus10011268 [exp] 91 / 3e-22 AT5G41630 52 / 7e-08 F-box/RNI-like superfamily protein (.1) Lus10028649 [exp] 93 / 2e-21 AT1G21380 452 / 7e-152 Target of Myb protein 1 (.1) Lus10011267 [exp] 83 / 1e-18 ND 39 / 0.002
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G224975 [exp] 69 / 1e-13 AT5G53840 48 / 4e-06 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.011G098700 [exp] 49 / 1e-06 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3) Potri.015G011200 [exp] 42 / 0.0003 AT4G03220 90 / 1e-19 Protein with RNI-like/FBD-like domains (.1) Potri.017G107600 [exp] 41 / 0.0004 AT1G13570 196 / 4e-58 F-box/RNI-like superfamily protein (.1) Potri.002G132400 [exp] 40 / 0.0006 AT1G13570 251 / 3e-79 F-box/RNI-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003089 pacid=23174300 polypeptide=Lus10003089 locus=Lus10003089.g ID=Lus10003089.BGIv1.0 annot-version=v1.0 ATGGCTTCTGACTCTGTTTCTATTGGAACGGAAGTATTCGATGTGGCTTTGGACTCTGTTTGTACATCACAAAAAGGAGAAGAAGTTGAATTGGGTTGGA ATAGTCAGCTGCCCGATGAAGTTGTCATCGATATCATATCTCGTTTGTCTCTCGCTGAAGCCATTAGAACATCATTCCTCTCAAGTAGGTGGATAAACTC GTGGAAATCAGCACTTTCGGTGCTCGACTTTGATGCCTCAAAGGAGTTGGTATCTTTACGCAGGATCGCCTCAACAAAATCTGATAGACTACTTCCCAAC AAGAGGCGTCAGTACATGAATTGGGTGAACTGTGTTATCAAAACACCAGCTGGATTGCATGATATTAGCTTCTTGAGATCCTTGTGCTTGACTAATGTTA ATGTTGGGGACGAGATTCTTGAACATTTCATTGCCAATTGCCCCATGATTGAAGAGTTAGTTGTGAAATGGTCAGATCGTCTGAAAAAGCTCAAGGTTGT AGGTTCTTCATTGAATTTGAAGCACTTGAAAGTAAGAGCTTGCCCATTTTTCAAATCTGTAGAGATTGATCATGCCCCTCACCTCGAGCGTTTGATATGT TCTGGCGGTGGCCGTGTGAAGGAAATCAAAGTGGGTAATTGCTCATCGCTTGTGGATATGACCTTATGTAACGAGTTTATTTGCAGTCAAATGGTTGTTG GATAA
AA sequence Show only first row Show all	>Lus10003089 pacid=23174300 polypeptide=Lus10003089 locus=Lus10003089.g ID=Lus10003089.BGIv1.0 annot-version=v1.0 MASDSVSIGTEVFDVALDSVCTSQKGEEVELGWNSQLPDEVVIDIISRLSLAEAIRTSFLSSRWINSWKSALSVLDFDASKELVSLRRIASTKSDRLLPN KRRQYMNWVNCVIKTPAGLHDISFLRSLCLTNVNVGDEILEHFIANCPMIEELVVKWSDRLKKLKVVGSSLNLKHLKVRACPFFKSVEIDHAPHLERLIC SGGGRVKEIKVGNCSSLVDMTLCNEFICSQMVVG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G53840			F-box/RNI-like/FBD-like domain...		Lus10003089 [exp]	0	1

Compare expression of checked genes

Lus10003089 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.