Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63430 228 / 8e-66 unknown protein AT5G15580 83 / 5e-16 LNG1 longifolia1 (.1) AT1G74160 77 / 4e-14 unknown protein AT3G02170 71 / 2e-12 LNG2 longifolia2 (.1) AT1G18620 65 / 2e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014716 [exp] 1296 / 0 AT3G63430 227 / 2e-65 unknown protein Lus10018750 [exp] 919 / 0 AT3G63430 248 / 6e-73 unknown protein Lus10024836 [exp] 901 / 0 AT3G63430 246 / 3e-72 unknown protein Lus10017857 [exp] 68 / 3e-11 AT1G74160 752 / 0.0 unknown protein Lus10034678 [exp] 60 / 6e-09 AT1G74160 594 / 0.0 unknown protein Lus10021148 [exp] 57 / 5e-08 AT1G74160 236 / 9e-69 unknown protein Lus10034677 [exp] 56 / 5e-08 AT1G74160 182 / 1e-51 unknown protein Lus10021612 [exp] 45 / 5e-05 ND / Lus10024434 [exp] 44 / 0.0005 AT3G53540 449 / 2e-144 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G046700 [exp] 779 / 0 AT3G63430 327 / 8e-103 unknown protein Potri.005G216300 [exp] 739 / 0 AT3G63430 245 / 3e-72 unknown protein Potri.015G058900 [exp] 78 / 1e-14 AT1G74160 795 / 0.0 unknown protein Potri.012G061900 [exp] 74 / 3e-13 AT1G74160 730 / 0.0 unknown protein Potri.017G095000 [exp] 62 / 1e-09 AT1G74160 399 / 3e-122 unknown protein Potri.016G080200 [exp] 52 / 2e-06 AT3G53540 234 / 1e-64 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003090 pacid=23174308 polypeptide=Lus10003090 locus=Lus10003090.g ID=Lus10003090.BGIv1.0 annot-version=v1.0 ATGGCGGGGGTTGTGCAGGAACATCAATTGGAGAAGCAGATTGAGAAGCAAATCGGGTGCATGGCTGGTTTCTTTCAGATCTTCGATCGCAATCAGATTC TCGCAGGAAAACGTCTCCATTCCGCTAAATGCCTTCCACCTCTTGCGCTTGCTGATTCGGCGCCGGAGCCGGAAAAGTCGATTGCCTCTCAGAGGAAGAT CTCACCGGAGACGGAAAAGCAGTTTGAATCGAGATCAACAATGCCTTCTCAAGATAAGTTGAAGCAATCTCCATTGCCCGGGTTCTCGACTCCTGAAGTT TTAGCTCTCCCGTGTGTTACTCCTTCCAAATCGCCGGTTCCTTTATCTTCGTCGTGGAAGTTTGGCAAAGAGACACCGAGGCTTTCACTGGATAGCAGAG CAACTGTCGACGCCAAAGGACGGCTCAAGCCGAGAGAGCTTCGAACAAACGGTGCGATGAATCGACAGAAGACTGGATCGTCAAGCGTGATCGCGAAATT GATGGGACTGGAACTGTTGCCCAAATCGGATCTAGAGCCAGCGGAGGAACAGCCGGAATTACGAAGATCCGCGTCGGAATCGAGAGATAACAGAGATCTC CCGCAGTACCGATTCATCGACGGTGTTAATTTCCAACTCAAGCAGCCGTCGCAAGCAAAGCAAAATGTTCAGAGCTGCAATCCGCAGAATAGTACGGTTA GGAATGTCGCAGTCAAGAATCAGTTAGGGATTCAAAAAGATTGCAATGCTGTACGGCATAGCAGAGTCGATAGGCAACAGCCAAACAGAGCAATAGCAGG GGGACAGAGGAAGAGCTTCTACGACTCTGCCGATTTCTTTCCGGAGCCGAAACAACAGGCTGCTGTTTCCATATACGGAGAGATCGAGAAGAGGCTAAGA ATGAGAGGAATCGATGAGCCGTCGAAAGATCTCGAGACGCTGAAGCAAATCCTCGAGGCTCTTCAGTTGAAAGGCTTGCTCCATTCCAAGAATCCGCAGA CGAAGGGCCAAATCAATAGCCGAAGAAGTTTCGATGACTCCCCAATAGTTGTGATGAAGCCAGCGAGATCAATTTCTCCTGTGAGCCGTCCAGCAGGGAG AATCGGCATCGGCAGCGAATCTCCACCGGCTAGTTTCAGAACCAGAGCAGGACACCGGAGGGACTCTAGTTGGTCAAATGAGTCGCTACCAGCGATGAGT CCGAGGCGAGATAGGCCGGAGAGTGATCGAAACGCGCGAGCTAGAGGTAGGAACTGTAGTTCGCCGACTCGAAGCGAGAGCGGTGGCGCCAAGAGTCCTG TACGGAGGAGACCGTTGAGCGTTGAAGCGCAGAGGAGAATCGGGAATGAGACGGTGGAGCAGAGACGAGTATCTCCGGTTCAGTCTCCTAAAATCGGGTC AAGAAGATCCGGTCCAGATCAGAGCACGAATCAGTCACCTAGAAGACGGCCGGCGAAGGATGATAGCAAGGTTTACAATGCCGCAGCGGAGGATGAATCG TCCACCGTTTCAGAAAGTAGCTTAAGCGCCAATTCTCAATCCGAAGCCGAGAGGTCTAAAGATGGCAAAAATATACTAGATAGATGCGACAAGCTGCTTC ACAGCATTGCAGAGATGACGGCGGCCACCGCCGAGTTACAGCCGAGTCCTGTATCGGTCCTTGACTCGTCGTTTTACAGGGATGAATCTTCACCTTCTCC CGTTATGAAACGGAATGTTGATTTCAAAGGTCAAATAGTTAAATCAGAAGAGGATATGTGGAGCCCCACGGCGACCGGATCAGCTGAATCCGACGACTGT GAATTCACCTACGTCTCCGACATCCTCCGCGCTTCAAGCTACTTACCGGGAGACTCCGACGTATTCCTCCTGCTGGAAAAACAACAGCGTCTCCGAGGGA AAGATACATCCAAGCTGTCGAGATTACAGAGGAGGCTGATCTTCGATACCATTAATGAAATCCTGAAGAAGAAAAGAGAGCTGCCGCCTTGGAAGGCTGT TGTTAATTATTCTTCAAGTTCAGAAACTACGTGTTTGAACCAAATATGGTCGGAGTTCCAGAGGATTCAGGCGAGGGACGACTCGTCGTCGGAGGAGGAC GTGTTCGAGGTGATCTGCAGCGTCCTGAGGAAGGACCTGGCAGGTGATGCAGTGAGCGGGTGGGATGATTGCCACGTGGAGATGTCGGAGGTGGTGTTGG ATATCGAGAGACTTGTGTTTAAAGACTTGATAGGTGAGACAATCCGAGATCTGGCTAGTTTTTCCGGCCGTGGTCAAACACAAATGGCGACTGCCTCTCG TCGGAAGTTGGATTTCTGA
AA sequence Show only first row Show all	>Lus10003090 pacid=23174308 polypeptide=Lus10003090 locus=Lus10003090.g ID=Lus10003090.BGIv1.0 annot-version=v1.0 MAGVVQEHQLEKQIEKQIGCMAGFFQIFDRNQILAGKRLHSAKCLPPLALADSAPEPEKSIASQRKISPETEKQFESRSTMPSQDKLKQSPLPGFSTPEV LALPCVTPSKSPVPLSSSWKFGKETPRLSLDSRATVDAKGRLKPRELRTNGAMNRQKTGSSSVIAKLMGLELLPKSDLEPAEEQPELRRSASESRDNRDL PQYRFIDGVNFQLKQPSQAKQNVQSCNPQNSTVRNVAVKNQLGIQKDCNAVRHSRVDRQQPNRAIAGGQRKSFYDSADFFPEPKQQAAVSIYGEIEKRLR MRGIDEPSKDLETLKQILEALQLKGLLHSKNPQTKGQINSRRSFDDSPIVVMKPARSISPVSRPAGRIGIGSESPPASFRTRAGHRRDSSWSNESLPAMS PRRDRPESDRNARARGRNCSSPTRSESGGAKSPVRRRPLSVEAQRRIGNETVEQRRVSPVQSPKIGSRRSGPDQSTNQSPRRRPAKDDSKVYNAAAEDES STVSESSLSANSQSEAERSKDGKNILDRCDKLLHSIAEMTAATAELQPSPVSVLDSSFYRDESSPSPVMKRNVDFKGQIVKSEEDMWSPTATGSAESDDC EFTYVSDILRASSYLPGDSDVFLLLEKQQRLRGKDTSKLSRLQRRLIFDTINEILKKKRELPPWKAVVNYSSSSETTCLNQIWSEFQRIQARDDSSSEED VFEVICSVLRKDLAGDAVSGWDDCHVEMSEVVLDIERLVFKDLIGETIRDLASFSGRGQTQMATASRRKLDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63430			unknown protein		Lus10003090 [exp]	0	1
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10026993 [exp]	1.0	0.9479
AT5G23720		PHS1	PROPYZAMIDE-HYPERSENSITIVE 1, ...		Lus10032545 [exp]	3.5	0.9073
AT1G65380		AtRLP10, CLV2	clavata 2, Receptor Like Prote...		Lus10020189 [exp]	3.5	0.9207
AT2G23140			RING/U-box superfamily protein...		Lus10022919 [exp]	3.7	0.9006
AT1G60060			Serine/threonine-protein kinas...		Lus10029179 [exp]	4.2	0.9040
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10020804 [exp]	4.5	0.9067
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10011223 [exp]	5.5	0.9103
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Lus10024773 [exp]	8.5	0.8625
AT1G02410			cytochrome c oxidase assembly ...		Lus10017058 [exp]	9.1	0.8243
AT5G65700		BAM1	BARELY ANY MERISTEM 1, Leucine...		Lus10039641 [exp]	9.4	0.8832

Compare expression of checked genes

Lus10003090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.