Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32440 112 / 7e-28 Plant Tudor-like RNA-binding protein (.1.2.3) AT5G20030 93 / 3e-21 Plant Tudor-like RNA-binding protein (.1) AT2G25590 60 / 9e-10 Plant Tudor-like protein (.1) AT1G06340 50 / 2e-07 Plant Tudor-like protein (.1) AT5G13020 47 / 1e-05 AtEML3, ACK1 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) AT2G44440 45 / 4e-05 AtEML4 EMSY-like 4, Emsy N Terminus (ENT) domain-containing protein (.1) AT3G12140 45 / 5e-05 AtEML1, ACK3 EMSY-like 1, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.2), Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.3) AT5G23780 43 / 0.0002 ATDUF9 DOMAIN OF UNKNOWN FUNCTION 724 9 (.1) AT2G47230 43 / 0.0003 ATDUF6 DOMAIN OF UNKNOWN FUNCTION 724 6 (.1.2) AT1G03300 42 / 0.0004 ATDUF1 DOMAIN OF UNKNOWN FUNCTION 724 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014715 [exp] 607 / 0 AT4G32440 122 / 1e-31 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10018749 [exp] 303 / 2e-102 AT4G32440 130 / 3e-35 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10024835 [exp] 298 / 4e-100 AT4G32440 123 / 1e-32 Plant Tudor-like RNA-binding protein (.1.2.3) Lus10037805 [exp] 56 / 1e-08 AT3G06520 271 / 9e-86 agenet domain-containing protein (.1) Lus10017088 [exp] 56 / 2e-08 AT3G06520 283 / 1e-90 agenet domain-containing protein (.1) Lus10002437 [exp] 52 / 4e-07 AT3G62300 252 / 1e-73 DOMAIN OF UNKNOWN FUNCTION 724 7 (.1.2) Lus10000353 [exp] 51 / 8e-07 AT1G16890 313 / 3e-103 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10000615 [exp] 50 / 2e-06 AT1G16890 286 / 9e-95 UBIQUITIN CONJUGATING ENZYME 13B, ubiquitin-conjugating enzyme 36 (.1.2.3) Lus10031221 [exp] 50 / 2e-06 AT5G13020 440 / 7e-154 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G216200 [exp] 270 / 2e-88 AT5G20030 96 / 4e-22 Plant Tudor-like RNA-binding protein (.1) Potri.002G046800 [exp] 258 / 2e-83 AT4G32440 138 / 3e-37 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.018G030500 [exp] 90 / 9e-20 AT4G32440 273 / 2e-88 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.006G250600 [exp] 90 / 9e-20 AT4G32440 272 / 4e-88 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.001G173900 [exp] 83 / 1e-17 AT4G32440 208 / 2e-63 Plant Tudor-like RNA-binding protein (.1.2.3) Potri.001G229000 [exp] 48 / 6e-06 AT5G13020 413 / 1e-142 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.T070080 [exp] 48 / 6e-06 AT5G13020 456 / 3e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.009G022900 [exp] 48 / 7e-06 AT5G13020 431 / 4e-150 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.001G013800 [exp] 47 / 9e-06 AT5G13020 439 / 2e-152 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1) Potri.003G212300 [exp] 47 / 1e-05 AT5G13020 455 / 5e-159 EMSY-like 3, Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03735 [flax] [poplar] ENT ENT domain CL0049 [flax] [poplar] Tudor PF05641 [flax] [poplar] Agenet Agenet domain
Representative CDS sequence Show only first row Show all	>Lus10003091 pacid=23174311 polypeptide=Lus10003091 locus=Lus10003091.g ID=Lus10003091.BGIv1.0 annot-version=v1.0 ATGAAGTTCAGAAAGGGAAATCTAGTGTTAGTGGAAATTCTCGGCAGAGAAATTGACAACATTGATGATGGTGGTTCATGGTTTCCAGGCCAGGTGATTT CTTCTGCCCTGGACGACACTCATCTCCTGGTGAGATATGAGTCGGTTTTGGACGACAATGGAGAGCCTTTCACCAAGATGATTTTGAAAAATGAAGTTAG GCCTAGGCCGCCTGTTAAAAAGGTCGAAAATTGGAAAGTTGGTGATGCAGCAGAGGTCTTTGATGCTCAATGTTGGAGGGCAGGAAGAATTGTCAAGGCA TTCAAAAAGATGAACATCTTCATCGTGAAATTATCAGGGTCGGTTCAACTTAATGAGTTTCATGAGTCTAATCTAAGGGTTCAGCTGGTCTGGCATAAGA ACAAGTGGTTCGTTATTGACAAGGTTGCTCAAACTAGAACCAAGTGTAATGGTGGCTTAGCTTCCTGGCCAACATCATTGAAAATGATGAAGAATCATCC AGACAAGGTATTTAGCATGGAAAAATGCCATAAGAGGCCTCTAAATCAGAAAAATGCTGATACCGAAGAATCAAGTCATGATCAGTGGTTTGATGATGCT TCTAGTTTCGTGCCTAGACCTTTGCAGACTGAAGATAGCAGCTACCAGCAATGCTCCGTAGCTAGCTGTAGCTCGAATGAATTCCCCGAGTCTCATGTTC ATGACTTCCGGCAACCAGCCAATGTTGTTTCGGAGACCTCAGATGCGGAGTCCTCGTTCCCTTCCTTGCCTGCCAAGAAACAACGCCACATGAGCACTCC GAGCTCTGGCCCGAAATTTGAGGAGGTAGATATTCATGCATTAGAGTTCCATGCTTATAGGTCGACCGTGAAAGCACTATATGTCGCGGGGCCTTTGAGT TGGGAGCAAGAACTGCTCTTGACGAATCTTCGTGAATCTCTTCACATTTCAGATGAAGAACATCTACTTCAGCTGCGTCGTCTTTTGTCCACTGAAGTTC TATAG
AA sequence Show only first row Show all	>Lus10003091 pacid=23174311 polypeptide=Lus10003091 locus=Lus10003091.g ID=Lus10003091.BGIv1.0 annot-version=v1.0 MKFRKGNLVLVEILGREIDNIDDGGSWFPGQVISSALDDTHLLVRYESVLDDNGEPFTKMILKNEVRPRPPVKKVENWKVGDAAEVFDAQCWRAGRIVKA FKKMNIFIVKLSGSVQLNEFHESNLRVQLVWHKNKWFVIDKVAQTRTKCNGGLASWPTSLKMMKNHPDKVFSMEKCHKRPLNQKNADTEESSHDQWFDDA SSFVPRPLQTEDSSYQQCSVASCSSNEFPESHVHDFRQPANVVSETSDAESSFPSLPAKKQRHMSTPSSGPKFEEVDIHALEFHAYRSTVKALYVAGPLS WEQELLLTNLRESLHISDEEHLLQLRRLLSTEVL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G20030			Plant Tudor-like RNA-binding p...		Lus10003091 [exp]	0	1
AT1G04760		ATVAMP726	vesicle-associated membrane pr...		Lus10022804 [exp]	5.2	0.8565
AT5G35460			unknown protein		Lus10017161 [exp]	6.7	0.8354
AT3G08890			Protein of unknown function, D...		Lus10012232 [exp]	8.1	0.8463
AT1G43130		LCV2	like COV 2 (.1)		Lus10028563 [exp]	8.8	0.8131
AT3G19000			2-oxoglutarate (2OG) and Fe(II...		Lus10023851 [exp]	8.9	0.8464
AT1G31940			unknown protein		Lus10010425 [exp]	11.0	0.8255
AT4G26470			Calcium-binding EF-hand family...		Lus10008357 [exp]	11.6	0.8252
AT2G19830		VPS32, SNF7.2	SNF7 family protein (.1)		Lus10012921 [exp]	12.2	0.8424
AT4G17790			SNARE associated Golgi protein...		Lus10004564 [exp]	13.2	0.8349
AT1G64230		UBC28	ubiquitin-conjugating enzyme 2...		Lus10039323 [exp]	13.9	0.8048

Compare expression of checked genes

Lus10003091 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.