Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G38290 506 / 1e-177 AMT2;1, ATAMT2 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) AT3G24300 83 / 1e-16 ATAMT1;3, AMT1;3 ammonium transporter 1;3 (.1) AT3G24290 81 / 3e-16 AMT1;5 ammonium transporter 1;5 (.1) AT1G64780 68 / 5e-12 ATAMT1;2 ammonium transporter 1;2 (.1) AT4G13510 67 / 8e-12 ATAMT1;1, AMT1;1 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) AT4G28700 64 / 1e-10 AMT1;4 ammonium transporter 1;4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014713 [exp] 859 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024833 [exp] 794 / 0 AT2G38290 558 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10018748 [exp] 790 / 0 AT2G38290 557 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10009928 [exp] 631 / 0 AT2G38290 539 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10024186 [exp] 630 / 0 AT2G38290 540 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10001776 [exp] 609 / 0 AT2G38290 503 / 3e-175 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10020248 [exp] 560 / 0 AT2G38290 481 / 7e-167 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10025692 [exp] 513 / 4e-180 AT2G38290 639 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Lus10028397 [exp] 470 / 1e-163 AT2G38290 481 / 6e-168 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G047000 [exp] 709 / 0 AT2G38290 511 / 1e-179 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.005G216000 [exp] 696 / 0 AT2G38290 528 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.013G040401 [exp] 630 / 0 AT2G38290 471 / 1e-163 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.018G033500 [exp] 605 / 0 AT2G38290 525 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.006G247800 [exp] 511 / 7e-180 AT2G38290 462 / 1e-160 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.005G106000 [exp] 506 / 1e-177 AT2G38290 516 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.001G305400 [exp] 506 / 2e-177 AT2G38290 590 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.006G102800 [exp] 503 / 5e-176 AT2G38290 664 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.019G000800 [exp] 490 / 6e-171 AT2G38290 568 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2) Potri.016G121400 [exp] 489 / 9e-171 AT2G38290 648 / 0.0 AMMONIUM TRANSPORTER 2;1, ammonium transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00909 [flax] [poplar] Ammonium_transp Ammonium Transporter Family
Representative CDS sequence Show only first row Show all	>Lus10003093 pacid=23174302 polypeptide=Lus10003093 locus=Lus10003093.g ID=Lus10003093.BGIv1.0 annot-version=v1.0 ATGGCGAACGTCCTTCCATCCAATCTGGCGACCGATGACGGTAGCCCAGACTGGCTAAACAAAGGCGACAACGCCTGGCAGCTAACCGCCGCAACCCTCG TCGGAATGCAGAGTGTCCCGGGATTAGTAATCCTCTACGGCAGCATCGTGAAAAAGAAATGGGCCGTCAACTCGGCCTTCATGGCGCTCTACGCCTTCGC CGCCGTCCTAATCTGCTGGGTCGGGTGGGGTTACCAGATGTCGTTCGGCGGGAAGCTCATCCCGTTTTGGGGCAAACCCGACGTCGCATTGGACCAGAAG TTCTTGCTCGCCAGGACTTTCGTGGGTTACTTGCCGAATGCGACGATGGTTTACTTCCAGTTTGTGTTCGCGGCGATTACTCTGATTTTGATCGCGGGGG CTTTGTTGGGGAGGATGAATTTCCATGCTTGGATGATATTTGTTCCTCTCTGGCTGACGTTTTCGTATACGATTACGGCGTTTAGTATATGGTGCCCCAC TGGGTGGCTGGCTAAGAAGGGGATTATTGATTACTCTGGTGGTTATGTCATTCATCTTTCTTCTGGTGTTGCTGGCTTCACTGCTGCTTTCTGGGTGGGG CCCAGGGCCAACAAAGATAGGGAGAGGTTCCCGCCGAACAACATACTGCTGATGTTGGCAGGAGCAGGGCTATTGTGGATGGGATGGACAGGATTCAACG GTGGAGATCCATACACAGTCAGCATTGATGCCTCCCTGGCAGTACTCAACACCCACGTATGCACTGCCACTAGTTTGCTAGTGTGGCTACTCCTAGACAT CATGTTCTTTGGAAAGCCCTCCGTTATTGGAGCCATCCAAGGCATGATCACCGGCCTCGTCTGCATCACTCCTGCCGCCGGCGTGGTGCAAGGATGGTCA GCGATAATAATGGGAATACTGTCAGGAAGCATACCATGGTACACGATGATGGTCCTCCACAAGAAGATCACATTCCTCAAACACGTGGACGACACCATGG CAATCTTCCACACCCACGCAGTCGCCGGCAGCCTCGGCGGCATCCTCACCGGAATCTTCGCCGAGCCCAAGCTCTGCCGCATCTTCTACCTCGTGCCCAA CTGGGAGCACTACATCGGCCTCCTCAACGGTTTCCACAACGGCCAGGGCGGGGCAGGGTTCAAACAGTTGGGAGTCCAGTTGCTCGGAATCGTATTTGTA GTGTTCGTCAATGTCACGGTCACCAGCGTTATCTGCGTGCTGATTAGGTACGTTGTTCCGCTGAGGCTGTCGGAGGATGAGTTGACCATCGGCGACGACG CGATCCACGGGGAAGAAGCGTATGCGTTGTGGGGAGATGGGGAGAAGTACGAGTCGAGGCACAGCTCGTTCTACGGCGCCGATCAGGATGCTCCGGCGCC GTTGATCAAGGGTGGACAGGTTGAGATGGCTTAA
AA sequence Show only first row Show all	>Lus10003093 pacid=23174302 polypeptide=Lus10003093 locus=Lus10003093.g ID=Lus10003093.BGIv1.0 annot-version=v1.0 MANVLPSNLATDDGSPDWLNKGDNAWQLTAATLVGMQSVPGLVILYGSIVKKKWAVNSAFMALYAFAAVLICWVGWGYQMSFGGKLIPFWGKPDVALDQK FLLARTFVGYLPNATMVYFQFVFAAITLILIAGALLGRMNFHAWMIFVPLWLTFSYTITAFSIWCPTGWLAKKGIIDYSGGYVIHLSSGVAGFTAAFWVG PRANKDRERFPPNNILLMLAGAGLLWMGWTGFNGGDPYTVSIDASLAVLNTHVCTATSLLVWLLLDIMFFGKPSVIGAIQGMITGLVCITPAAGVVQGWS AIIMGILSGSIPWYTMMVLHKKITFLKHVDDTMAIFHTHAVAGSLGGILTGIFAEPKLCRIFYLVPNWEHYIGLLNGFHNGQGGAGFKQLGVQLLGIVFV VFVNVTVTSVICVLIRYVVPLRLSEDELTIGDDAIHGEEAYALWGDGEKYESRHSSFYGADQDAPAPLIKGGQVEMA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003093 [exp]	0	1
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034095 [exp]	1.0	0.9028
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10015285 [exp]	4.5	0.7948
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10035433 [exp]	8.2	0.7975
AT4G13030			P-loop containing nucleoside t...		Lus10025900 [exp]	8.8	0.8009
AT3G30340			nodulin MtN21 /EamA-like trans...		Lus10030168 [exp]	21.8	0.6946
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10018595 [exp]	23.9	0.7498
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Lus10032345 [exp]	25.0	0.7189
AT2G20880	AP2_ERF	AtERF53	ERF domain 53, Integrase-type ...		Lus10018578 [exp]	29.0	0.7275
AT1G25270			nodulin MtN21 /EamA-like trans...		Lus10020819 [exp]	29.5	0.7153
AT2G47600		ATMHX1, ATMHX	MAGNESIUM/PROTON EXCHANGER 1, ...		Lus10030365 [exp]	32.0	0.7073

Compare expression of checked genes

Lus10003093 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.