Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G63410 136 / 2e-40 VTE3, APG1, IEP37, E37 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014711 [exp] 163 / 2e-51 AT3G63410 424 / 3e-150 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024832 [exp] 140 / 5e-42 AT3G63410 494 / 5e-177 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10018747 [exp] 141 / 3e-41 AT3G63410 494 / 1e-174 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G215900 [exp] 147 / 2e-44 AT3G63410 492 / 3e-176 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.002G047100 [exp] 144 / 2e-43 AT3G63410 508 / 0.0 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G159400 [exp] 142 / 1e-42 AT3G63410 461 / 6e-164 VITAMIN E DEFECTIVE 3, INNER ENVELOPE PROTEIN 37, ALBINO OR PALE GREEN MUTANT 1, S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003095 pacid=23174299 polypeptide=Lus10003095 locus=Lus10003095.g ID=Lus10003095.BGIv1.0 annot-version=v1.0 ATGCTCTTCCTCAAGGAGGAAGAGTACATCGAGTGGTTGGAGAAGGCCAGGTTTCGAGATGTTCAGCTCAAGAGGATTGGCCCCAAGTGGTATCGCGGTG CTCGTCGATACGGGCTTATCATCGGATGTTCTGTCACCGTTGTTAGACCTGCACCTGGAGTCTCTCCTTTGAAGCTTGGTCCAAAGATCGAGGGTGTGGC GAAGCCGGAGAATCCGTTTGTGTTCTTGATGCCTTTCATTCTGGGCACCATGGCTGCAATATATTTTGGATTGTTACCAATCTACCATGCGGATCAAAGA TAA
AA sequence Show only first row Show all	>Lus10003095 pacid=23174299 polypeptide=Lus10003095 locus=Lus10003095.g ID=Lus10003095.BGIv1.0 annot-version=v1.0 MLFLKEEEYIEWLEKARFRDVQLKRIGPKWYRGARRYGLIIGCSVTVVRPAPGVSPLKLGPKIEGVAKPENPFVFLMPFILGTMAAIYFGLLPIYHADQR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G63410		VTE3, APG1, IEP...	VITAMIN E DEFECTIVE 3, INNER E...		Lus10003095 [exp]	0	1
AT5G64440		ATFAAH	fatty acid amide hydrolase (.1...		Lus10007095 [exp]	3.7	0.7762
AT5G66200		ARO2	armadillo repeat only 2 (.1)		Lus10037086 [exp]	5.7	0.7909
AT5G44390			FAD-binding Berberine family p...		Lus10026290 [exp]	7.9	0.8031
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10027281 [exp]	12.5	0.7562
AT4G10960		UGE5	UDP-D-glucose/UDP-D-galactose ...		Lus10001822 [exp]	12.9	0.8019
AT2G23790			Protein of unknown function (D...		Lus10016305 [exp]	21.4	0.8000
AT3G61760		ADL1B	DYNAMIN-like 1B (.1)		Lus10004007 [exp]	28.4	0.7787
AT4G06536			SPla/RYanodine receptor (SPRY)...		Lus10010241 [exp]	29.2	0.7014
AT4G08850			Leucine-rich repeat receptor-l...		Lus10005017 [exp]	33.4	0.7828
AT5G50180			Protein kinase superfamily pro...		Lus10035233 [exp]	33.5	0.7104

Compare expression of checked genes

Lus10003095 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.