Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24300 229 / 2e-73 ATAMT1;3, AMT1;3 ammonium transporter 1;3 (.1) AT4G13510 227 / 2e-72 ATAMT1;1, AMT1;1 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) AT3G24290 226 / 4e-72 AMT1;5 ammonium transporter 1;5 (.1) AT1G64780 226 / 9e-72 ATAMT1;2 ammonium transporter 1;2 (.1) AT4G28700 223 / 8e-71 AMT1;4 ammonium transporter 1;4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004761 [exp] 210 / 4e-70 AT3G24300 226 / 4e-73 ammonium transporter 1;3 (.1) Lus10004403 [exp] 217 / 9e-69 AT4G13510 739 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Lus10023705 [exp] 217 / 2e-68 AT4G13510 748 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Lus10018229 [exp] 154 / 1e-44 AT1G64780 610 / 0.0 ammonium transporter 1;2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G023600 [exp] 254 / 5e-83 AT1G64780 730 / 0.0 ammonium transporter 1;2 (.1) Potri.013G049925 [exp] 237 / 9e-80 AT4G13510 258 / 4e-84 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.010G063500 [exp] 230 / 1e-73 AT4G13510 671 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.002G255000 [exp] 228 / 6e-73 AT4G13510 688 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.008G173800 [exp] 220 / 1e-69 AT4G13510 692 / 0.0 ARABIDOPSIS THALIANA AMMONIUM TRANSPORT 1, ammonium transporter 1;1 (.1) Potri.002G255100 [exp] 218 / 7e-69 AT4G28700 633 / 0.0 ammonium transporter 1;4 (.1) Potri.009G045200 [exp] 165 / 7e-49 AT1G64780 529 / 0.0 ammonium transporter 1;2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00909 [flax] [poplar] Ammonium_transp Ammonium Transporter Family
Representative CDS sequence Show only first row Show all	>Lus10003096 pacid=23165941 polypeptide=Lus10003096 locus=Lus10003096.g ID=Lus10003096.BGIv1.0 annot-version=v1.0 ATGACATCTTTAACCTGCTCAGCTTCAGATCTAGCATCCCTCCTATCAACCACTCAAAACTCCACCCAGGCAGCAACCTACCTCTGCTCCCAACTCTCCT CCATCTCCAACCAGCTCTCCGACACAAACTATGCAATCAACAACACTTACCTCCTCTTCTCCGCCTACTTGGTCTTCGCCATGCAGCTCGGGTTCGCCAT GCTCTGCGCGGGCTCCGTCAGGGCGAAGAACACCATGAACATCATGCTTACCAACGTCCTCGACGCAGCTGCAGGCGGCCTCTCCTACTACCTATTTGGG TACGCCTTCGCCTTCGCCTTCGGCGCCCCTAGCAACGGTTTCATCGGCCGGCACTTCTTTGGCCTGCATGATTTCCCTTCTCCGACGGCCGACTATAGCT TCTTCCTCTACCAGTGGGCTTTTGCCATCGCCGCGGCAGGAATCACTAGTGGCTCCATTGCTGAGAGGACTCAGTTCGTTGCTTACCTTGTGTATTCGTC TTTCCTGACAGGTTTTGTTTACCCTGTTGTTTCTCACTGGGTCTGGTCGGGTGATGGGTGGGCCAGTGCGACCCGACCGAATAACACGACCGAATAA
AA sequence Show only first row Show all	>Lus10003096 pacid=23165941 polypeptide=Lus10003096 locus=Lus10003096.g ID=Lus10003096.BGIv1.0 annot-version=v1.0 MTSLTCSASDLASLLSTTQNSTQAATYLCSQLSSISNQLSDTNYAINNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLSYYLFG YAFAFAFGAPSNGFIGRHFFGLHDFPSPTADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLVYSSFLTGFVYPVVSHWVWSGDGWASATRPNNTTE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24300		ATAMT1;3, AMT1;...	ammonium transporter 1;3 (.1)		Lus10003096 [exp]	0	1
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10004760 [exp]	1.4	0.9477
AT3G24300		ATAMT1;3, AMT1;...	ammonium transporter 1;3 (.1)		Lus10004761 [exp]	2.4	0.9159
AT1G78510		SPS1	solanesyl diphosphate synthase...		Lus10013703 [exp]	2.8	0.8519
AT1G64780		ATAMT1;2	ammonium transporter 1;2 (.1)		Lus10000823 [exp]	3.0	0.8892
AT5G36930			Disease resistance protein (TI...		Lus10035674 [exp]	6.0	0.8077
					Lus10008016 [exp]	9.2	0.7611
AT2G24580			FAD-dependent oxidoreductase f...		Lus10020132 [exp]	12.4	0.8297
AT1G05590		HEXO2, ATHEX3	BETA-HEXOSAMINIDASE 3, beta-he...		Lus10007899 [exp]	30.7	0.8442
AT5G58610			PHD finger transcription facto...		Lus10007741 [exp]	31.1	0.7351
AT1G79460		ATKS1, ATKS, GA...	GA REQUIRING 2, ARABIDOPSIS TH...		Lus10029033 [exp]	32.4	0.8176

Compare expression of checked genes

Lus10003096 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.