Plant FIBer expression Database

Lus10003097 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G37360 189 / 4e-59 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004762
[exp]
274 / 3e-92 AT5G37360 309 / 3e-105 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.013G050300
[exp]
204 / 7e-65 AT5G37360 295 / 1e-99 unknown protein
Potri.019G023700
[exp]
201 / 8e-64 AT5G37360 327 / 4e-112 unknown protein
PFAM info
Representative CDS sequence
>Lus10003097 pacid=23165944 polypeptide=Lus10003097 locus=Lus10003097.g ID=Lus10003097.BGIv1.0 annot-version=v1.0
ATGAGAGAGCCTTTTAAGCATTTGGCGAGATCAAAGCCTGTCGTCACTCCGTTGCTTGCTGTAACTGAATCGTCGGAAGGTTCTACTCAGTCTACTGGCC
CTTCTCTTCAGTCTCTTCTCCTTGAGCTATCCGATAGTTTTGATCTTCCGTCGGATTACTTCAGCCAGCTGCCTAATGATCTTCGGTTGGATTTGAATGA
CGCGCCTTTTGATCTATCAAATGGACCTGTTATTGATGAGTGTGGTCAAGTGCTTGGAAACCTCCTGTTAAATCTGTCTCGAGCATGGGAGCGACCTGAC
ATGAATGCTGATTCCTTTTTCTGTTCTGCTAATTCGGCATTGGGAAGGCGCTTACTATCATCTGGAAGGAGATTCCAGTCGATGGGACAGTACGGTCAAG
GTGAAATTCAGAAGATTGCTCAGGCAATGATTACAACTGGGAAGTTTCTAACTGCAAGTCCAACTGAAGAAACAATTGACAAAGAACCAATGAACGAAAC
CAAAGTTTTCAAGTTTGGAGAACTTCAGGTTGCAATAACACCAGCCAAAGCTAACATTGGGGCTGCCCTAGGAGCTGTTTTCGGTATTCTATCATGGGAA
CTAGCCCAGGGTGTTCAAAGCATTCCAGAGAGCTCTTTACAGAATGCCAATGACAATGCATTGCTGCTGGCTAAGGCAGCTGAAGTCAGAGGACAAGTGA
TGTTTCATATTATGAAGTCAGAGTACACTGCGATACTTATCCCAAGGCTTGAGCTCTTTAGGCGATAA
AA sequence
>Lus10003097 pacid=23165944 polypeptide=Lus10003097 locus=Lus10003097.g ID=Lus10003097.BGIv1.0 annot-version=v1.0
MREPFKHLARSKPVVTPLLAVTESSEGSTQSTGPSLQSLLLELSDSFDLPSDYFSQLPNDLRLDLNDAPFDLSNGPVIDECGQVLGNLLLNLSRAWERPD
MNADSFFCSANSALGRRLLSSGRRFQSMGQYGQGEIQKIAQAMITTGKFLTASPTEETIDKEPMNETKVFKFGELQVAITPAKANIGAALGAVFGILSWE
LAQGVQSIPESSLQNANDNALLLAKAAEVRGQVMFHIMKSEYTAILIPRLELFRR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G37360 unknown protein Lus10003097
[exp]
0 1
AT5G26330 Cupredoxin superfamily protein... Lus10006683
[exp]
8.0 0.8397
AT3G05610 Plant invertase/pectin methyle... Lus10033466
[exp]
9.5 0.8702
AT2G33530 SCPL46 serine carboxypeptidase-like 4... Lus10040324
[exp]
15.0 0.8441
Lus10006761
[exp]
18.1 0.8417
AT1G21850 SKS8 SKU5 similar 8 (.1) Lus10022648
[exp]
25.1 0.8380
Lus10037837
[exp]
26.7 0.8127
Lus10003536
[exp]
30.0 0.8103
AT4G17220 ATMAP70-5 microtubule-associated protein... Lus10003908
[exp]
32.1 0.8103
AT2G23540 GDSL-like Lipase/Acylhydrolase... Lus10005236
[exp]
34.1 0.8103
Lus10011078
[exp]
35.9 0.8103

Lus10003097 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.