Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38890 232 / 1e-78 Nucleic acid-binding, OB-fold-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004763 [exp] 300 / 9e-106 AT5G38890 255 / 4e-88 Nucleic acid-binding, OB-fold-like protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G050400 [exp] 275 / 2e-95 AT5G38890 293 / 2e-102 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0021 [flax] [poplar] OB PF10447 [flax] [poplar] EXOSC1 Exosome component EXOSC1/CSL4
Representative CDS sequence Show only first row Show all	>Lus10003098 pacid=23165940 polypeptide=Lus10003098 locus=Lus10003098.g ID=Lus10003098.BGIv1.0 annot-version=v1.0 ATGTATGTTTTCTCTTCTCTCAGCGGTCTCCGCCGTACTCATCCTCCTCCTCCAGACTCTCCCGACCAGAGACCAACGGTGGAGGTGATTGGACATAAAG CTCGTGGTGCTGTTCCAGAAACTGGATCTGTCGTTATTGCTCGAGTAACTAAAGTTATGGCTAAGATGGCTTCCGCTGATATTATGTGTGTTGGGCCGAA ATCTGTGCGGGAGAAGTTTACAGGTATCATAAGGCAACAAGATGTAAGAGCTACTGAGATTGATAAAGTGGATATGCACTTGTCATTTCGCCCTGGTGAC ATAGTCAAAGCCTTAGTTACATTGTTCTTTAACTCCAACAAGCTTTCCCTTGGAGATGCACGCGCATATTATCTCTCAACAGCGAAGAACGAGCTAGGAG TTGTCTCTGCTAACAGCACTGCTGGCGCAACCATGGTTCCAATCAGTTGGACAGAGATGCAATGCCCGCTGACTGGACAAATAGAGCAAAGAAAGGTAGC TAAAGTAGGAGGTTGA
AA sequence Show only first row Show all	>Lus10003098 pacid=23165940 polypeptide=Lus10003098 locus=Lus10003098.g ID=Lus10003098.BGIv1.0 annot-version=v1.0 MYVFSSLSGLRRTHPPPPDSPDQRPTVEVIGHKARGAVPETGSVVIARVTKVMAKMASADIMCVGPKSVREKFTGIIRQQDVRATEIDKVDMHLSFRPGD IVKALVTLFFNSNKLSLGDARAYYLSTAKNELGVVSANSTAGATMVPISWTEMQCPLTGQIEQRKVAKVGG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G38890			Nucleic acid-binding, OB-fold-...		Lus10003098 [exp]	0	1
AT3G52170			DNA binding (.1.2)		Lus10028828 [exp]	1.7	0.8111
AT5G13830			FtsJ-like methyltransferase fa...		Lus10023402 [exp]	3.0	0.7539
AT3G13860		HSP60-3A	heat shock protein 60-3A (.1)		Lus10003791 [exp]	3.2	0.7888
AT4G10650			P-loop containing nucleoside t...		Lus10006578 [exp]	5.3	0.7198
AT5G37530			NAD(P)-binding Rossmann-fold s...		Lus10012735 [exp]	11.0	0.7208
AT5G43822			Pentatricopeptide repeat (PPR)...		Lus10030735 [exp]	11.1	0.7259
AT4G24830			arginosuccinate synthase famil...		Lus10033978 [exp]	18.5	0.7195
AT1G53330			Pentatricopeptide repeat (PPR)...		Lus10026218 [exp]	19.0	0.6792
AT1G05730			Eukaryotic protein of unknown ...		Lus10025588 [exp]	22.2	0.7013
AT1G07615			GTP-binding protein Obg/CgtA (...		Lus10040813 [exp]	23.9	0.6444

Compare expression of checked genes

Lus10003098 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.