Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18470 290 / 9e-95 Curculin-like (mannose-binding) lectin family protein (.1) AT3G16030 193 / 2e-54 CES101 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) AT1G67520 176 / 3e-49 lectin protein kinase family protein (.1) AT4G27290 154 / 6e-41 S-locus lectin protein kinase family protein (.1) AT4G21390 145 / 1e-37 B120 S-locus lectin protein kinase family protein (.1) AT1G11410 141 / 2e-36 S-locus lectin protein kinase family protein (.1) AT1G11340 139 / 2e-35 S-locus lectin protein kinase family protein (.1) AT1G11350 136 / 2e-34 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT4G27300 135 / 3e-34 S-locus lectin protein kinase family protein (.1) AT2G19130 134 / 4e-34 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004765 [exp] 358 / 2e-124 AT5G18470 108 / 3e-28 Curculin-like (mannose-binding) lectin family protein (.1) Lus10038557 [exp] 172 / 8e-47 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 167 / 3e-45 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 166 / 1e-44 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014808 [exp] 164 / 1e-44 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 165 / 2e-44 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10014812 [exp] 159 / 2e-42 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10024064 [exp] 155 / 4e-41 AT1G11340 735 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10023391 [exp] 155 / 8e-41 AT1G11300 520 / 5e-168 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G050500 [exp] 266 / 7e-87 AT5G18470 228 / 7e-72 Curculin-like (mannose-binding) lectin family protein (.1) Potri.001G409300 [exp] 172 / 5e-47 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G442200 [exp] 171 / 9e-47 AT3G16030 528 / 5e-176 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.001G441400 [exp] 170 / 2e-46 AT3G16030 523 / 1e-174 CALLUS EXPRESSION OF RBCS 101, lectin protein kinase family protein (.1) Potri.010G017800 [exp] 163 / 1e-45 AT4G27290 462 / 1e-156 S-locus lectin protein kinase family protein (.1) Potri.001G414077 [exp] 167 / 2e-45 AT4G27290 855 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125000 [exp] 166 / 5e-45 AT4G27290 790 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018600 [exp] 166 / 7e-45 AT4G27290 853 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G036612 [exp] 166 / 7e-45 AT4G27290 655 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411000 [exp] 165 / 1e-44 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0168 [flax] [poplar] PAN PF08276 [flax] [poplar] PAN_2 PAN-like domain CL0168 [flax] [poplar] PF01453 [flax] [poplar] B_lectin D-mannose binding lectin
Representative CDS sequence Show only first row Show all	>Lus10003099 pacid=23165948 polypeptide=Lus10003099 locus=Lus10003099.g ID=Lus10003099.BGIv1.0 annot-version=v1.0 ATGGCTACTTCAGCATTCATTCTCCTCTTCATAATTTCCTCTTCTTTCACCCTTAACCATGTTTCATGTGCAGAGACAGACACACTCAAACCCGGCCAGC TACTCCGCGATTGGGAGCAGCTGGTTTCGTCAGGAAAGGTCTTCAGGTTGGGATTCTTCAATCCCAACCCGAACACCGTCCAACTAGGGCCTTCAGGCCC TAGATACCTCGGCATTTGGTTCGACAACATCCCTTTTTACTCCGTCTGGGTAGCCAACCGCGAAAATCCCGTCCCAGATTCCTCCGGCACTCTATCAATC AGCCCTGACGGAAAAATCATAATCAAGCACCAAGGAAGCAACAGTTCCATCATCATAAACCCAAATCAACCTAACAAAACCACTTCCTCGTCAATTGCTC TCACCTTACTCGACTCAGGAAACCTGGTCATCAGAAGAACAGATCGAAACGGAATTCCAATTCCAGGATCTTTCATCTGGCAGAGCTTCGATTACCCTCA CAACATGCTTCTCCCAGGAATGAAATTGGGGAAAAATCTGAAAACGGGACAAACCTGGGAGCTCACCTCTTGGCTGAGCGACAAAGTCCCATCCCCTGGC GCATTCAAATTAACACTCGACCCTTCAGGAATCGATCAATTGCTAGTATGGCGACGCGGAAAAATTTACTGGTCAACGGGAACGTTCAAAAACGGTAGCT TCCAGAACGCTACTTCGCTCACCGGATTAACGAAAGACTTAGGAATCTACGAAATCAACTTCGTTAAGAATGGCGACGAGAGATATTTTACGTACTCGAT TCGTAACGGGCCTGCTCTGTCCAGGATGGATTTGGACACTCTAGGCCAGATCACGCTCTTCACTCTGGACGGAAGAAGAGGTAGTCAGTCGTGGATCTTC GACACGGCGGGGAGCCCGTGCCCTGCCGGCGTGGGGAACGTTGGTGTTTGCTTGGCGGAGGAAGGTGGATCTGGCTGCCGGAATGGGTCGGAGGTGTTCG TCGGGAAGAGAGGGTATATGATCGGAGAACAGAGGTTTGGAGAAGGATCGTCGTTGAGTCTGAGCGATTGCCATGGGGAGTGCTGGAGGAATTGTTCGTG CGTGGCGTATCAAGCGGCGTCGTATGATGGGACTGGGTGCAGGTTTTGGAGTCGCGGGTCGAATTTTACCGCTGATGATTTTATTGGGCTTGATGGAATT GCTGACGTGGCTTACCTTCTCAAGTGA
AA sequence Show only first row Show all	>Lus10003099 pacid=23165948 polypeptide=Lus10003099 locus=Lus10003099.g ID=Lus10003099.BGIv1.0 annot-version=v1.0 MATSAFILLFIISSSFTLNHVSCAETDTLKPGQLLRDWEQLVSSGKVFRLGFFNPNPNTVQLGPSGPRYLGIWFDNIPFYSVWVANRENPVPDSSGTLSI SPDGKIIIKHQGSNSSIIINPNQPNKTTSSSIALTLLDSGNLVIRRTDRNGIPIPGSFIWQSFDYPHNMLLPGMKLGKNLKTGQTWELTSWLSDKVPSPG AFKLTLDPSGIDQLLVWRRGKIYWSTGTFKNGSFQNATSLTGLTKDLGIYEINFVKNGDERYFTYSIRNGPALSRMDLDTLGQITLFTLDGRRGSQSWIF DTAGSPCPAGVGNVGVCLAEEGGSGCRNGSEVFVGKRGYMIGEQRFGEGSSLSLSDCHGECWRNCSCVAYQAASYDGTGCRFWSRGSNFTADDFIGLDGI ADVAYLLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18470			Curculin-like (mannose-binding...		Lus10003099 [exp]	0	1
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006244 [exp]	1.7	0.9792
AT5G52390			PAR1 protein (.1)		Lus10016450 [exp]	2.0	0.9748
AT1G09080		BIP3	binding protein 3, Heat shock ...		Lus10013055 [exp]	4.5	0.9652
AT3G09280			unknown protein		Lus10018504 [exp]	4.5	0.9358
AT2G37540			NAD(P)-binding Rossmann-fold s...		Lus10023762 [exp]	4.9	0.9525
					Lus10010397 [exp]	5.2	0.9699
AT3G52740			unknown protein		Lus10020614 [exp]	5.2	0.9560
AT3G24420			alpha/beta-Hydrolases superfam...		Lus10017735 [exp]	5.3	0.9521
AT5G45650			subtilase family protein (.1)		Lus10002780 [exp]	5.5	0.9546
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10007674 [exp]	5.9	0.9563

Compare expression of checked genes

Lus10003099 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.