Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64790 2267 / 0 ILA ILITYHIA (.1.2) AT3G25800 53 / 1e-06 PP2AA2, PR65, PDF1 protein phosphatase 2A subunit A2 (.1.2) AT1G25490 53 / 1e-06 REGA, PR65, EER1, ATBBETABETA, RCN1 ROOTS CURL IN NPA, ENHANCED ETHYLENE RESPONSE 1, ARM repeat superfamily protein (.1) AT1G13320 51 / 5e-06 PR65, PDF2, PP2AA3 protein phosphatase 2A subunit A3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004767 [exp] 2495 / 0 AT1G64790 3557 / 0.0 ILITYHIA (.1.2) Lus10003747 [exp] 402 / 7e-130 AT1G64790 368 / 2e-117 ILITYHIA (.1.2) Lus10035038 [exp] 50 / 1e-05 AT3G25800 1134 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Lus10021695 [exp] 50 / 2e-05 AT3G25800 1129 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Lus10034299 [exp] 49 / 3e-05 AT3G25800 1102 / 0.0 protein phosphatase 2A subunit A2 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G024200 [exp] 2390 / 0 AT1G64790 3726 / 0.0 ILITYHIA (.1.2) Potri.012G062700 [exp] 53 / 1e-06 AT3G25800 1116 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Potri.010G127500 [exp] 51 / 7e-06 AT3G25800 1086 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Potri.008G118500 [exp] 50 / 1e-05 AT3G25800 1115 / 0.0 protein phosphatase 2A subunit A2 (.1.2) Potri.004G229300 [exp] 48 / 6e-05 AT2G02560 1913 / 0.0 HEMIVENATA, CULLIN-ASSOCIATED AND NEDDYLATION DISSOCIATED 1, cullin-associated and neddylation dissociated (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01602 [flax] [poplar] Adaptin_N Adaptin N terminal region CL0020 [flax] [poplar] TPR PF02985 [flax] [poplar] HEAT HEAT repeat
Representative CDS sequence Show only first row Show all	>Lus10003101 pacid=23165951 polypeptide=Lus10003101 locus=Lus10003101.g ID=Lus10003101.BGIv1.0 annot-version=v1.0 ATGTCAATTGCTGAAGCTGCAGAGGATATTTGGGATCGCTATGGACATGAGATTGGAACTGATTATTCTGGGCTCTTCAAAGCACTTTCTCATGTAAATT ACAATGTTCGATTAGCTGCTGCGGAGGCATTAGCTGCAGCTTTGGATGAACACCCTGATTCAATACAGGAGACTCTTTCCACTTTATTTTCATCCTATCT ACGGGATGCTGGAAGTGGAGACAATAATGTTGATGCTGGTTGGCTTGGTAGACAAGGAGTATCTTTGGCTTTGCATTCAGCTGCTGATGTGTTGAGAACG AAGGACCTTCCTGTTATCATGACCTTCCTCATATCACGAGCTCTTGCAGATCCAAACACGGATGTTCGTGGAAGAATGATCAATGCTAGTATTCTGATTA TTGACAGACATGGAAAAGATAACGTCTCCTTGCTGTTTCCGATCTTTGAGAACTACTTAAACAAGAAGGTAATAGCCCAAGTTGAATCTCAAGGTGAAGG TCCTGGGGCATCTGATGAAGAAACATATGATTTGGTTCGTGAAGGTGTAGTTATATTCACAGGGGCTTTGGCAAAACATCTTGCGAAGGATGATCCTAAA GTTCATGCTGTTGTGGAGAAGTTGTTGGACGTTCTAAATACACCCTCTGAAGCTGTTCAGCGGGCAGTATCAGACTGCCTATCCCCGCTGATGCAGTCAA TGAAAGATGATGCTGCTCCTCTTCTTTCAAGACTATTGGACCAGCTGATGAAGAGTGACAAATATGGTGACCGCCGTGGTGCAGCTTTTGGACTGGCTGG AGTGGTTAAGGGATTTGGTTTATCTTGCTTGAAGAAGTATGGAATTATTGCTACTTTGAGGGAGGGTCTTGTTGATAGGACTTCTGCAAAATCTCGAGAA GGAGCTCTCTTGGCTTTCGAGTGCTTGTGTGAAAAGCTTGGGAAATTGTTTGAACCTTATGTCATCCAAATGCTACCAGTACTGTTGGTTTCCTTCTCCG ATCAAGTTGTGGCTGTTCGTGAAGCAGCCGAATGTGCTGCGCGGGCAATGATGGCTCAGCTCAGCGTGCAAGGTGTTAAGCTTGTGCTCCCATCACTCTT GAAGGGTCTTGAGGATAGAGCTTGGCGTACAAAAGAGAGCAGTGTCCAACTACTTGGTGCAATGGCATACTGTGCTCCTCAGCAGCTCTCTCAGTGCCTT CCAGCTATAGTGCCTAAACTGACAGAGGTATTGACTGATACACACCCTAAAGTTCAGACGGCTGGACAAACCGCATTACAGCAGGTTGGAAGTGTGATAA AGAACCCAGAAATATCTTCCCTTGTTCCTACACTTCTGACGGCCCTTTCGGACCCCAATGATTATACTAAATACGCTCTTGATATTCTCCTTCAAACGAC ATTTGTTAATTCAATCGATGCGCCTTCACTTGCCCTGCTGGTACCTATTGTTCATAGAGGGCTGAGGGAGAGGAGTGCAGAAACTAAAAAGAAAGCTGCA CAGATTGTTGGGAACATGTGTTCATTGGTCACGGAACCTAGGGATATGATTCCTTACATTGGTTTGCTTCTTCCTGAAGTGAAAAAGGTTCTTGTAGATC CAATTCCTGAAGTTCGATCAGTTGCAGCACGGGCACTTGGATCTCTTATCAGAGGGATGGGTGAAGAGAAATTCCCAGATCTTGTTCCTTGGTTGTTTGA CACTCTTAAATCTGATGGCAACAATGTTGAGAGATCTGGGGCTGCTCAAGGGTTGAGTGAGGTTTTGGCTGCACTTGGAGTGGATTACTTTGAACGTGCA CTTCCAGATATTGTTCGGAGCTGTTCTCATCAAAAGGCTTCTGTGCGTGATGGATATCTGACGCTATTCAAGTATTTACCAAGGTCATTAGGTGTTCAAT TCCAGAATTATTTGCAGCAAGTATTACCTGCTATCATAGATGGTCTGGCTGATGAGAATGAATCTGTGCGTGAAGCAGCATTAGGTGCTGGACATGTCCT TGTTGAGCACTATGCAATAACATCCTTACCACTTCTACTTCCGGCTGTTGAGGATGGAATATTTAATGACAATTGGCGTATTAGACAGAGCTCCGTGGAG TTGTTGGGAGATCTCTTGTTTAAGGTTGCTGGAACTTCTGGAAAATCTTTGCTTGAAGGTGGCAGTGATGATGAAGGTGCAAGTACTGAAGCACAGGGGC GTGCCATTATAGAGGTTTTGGGGAGAGACCGGCGTAATGAGATTCTGGCTGCATTGTATATGGTTCGGACAGACATCAGTTTATCTGTTCGTCAGGCTGC ATTGCATGTATGGAAAACAATTGTGGCAAATACTCCCAAAACTCTGAAAGAAATAATGCCAGTATTAATGAGTACTTTAATAGCTTCACTTGCTTCATCG TCCTCAGAAAGACGGCAGGTTGCAGGTCGTGCATTGGGTGAACTTGTTCGGAAGCTCGGTGAAAGAGTACTTCCTCTGATAATCCCAATCTTGTCTCGAG GGCTGAAGGATCCTGATGCAAGCAGAAGACAGGGCGTATGCATTGGTCTAAGTGAAGTAATGGGAAGTGCCGGGAGAAGTCAATTACTAAGTTTCATGGA TGACCTTATTCCTACCATCAGGGTTGCTCTTTGTGACAGTGAGCTGGAGGTTCGTGAGTCTGCTGGCCTAGCATTCAGTACACTATACAAGAGTGCTGGA CTGCAAGCAATTGATGAGATTGTCCCTACTTTGCTCCATGCTCTTGAAGATGACGAGACTTCTGATACTGCTCTGGACGGCCTGAAGCAAATCCTAAGTG TCAGGACTGCTGCTGTGTTGCCTCACATCTTGCCTAAGCTGGTTCATCCTCCTCTTACGGCCTTCAATGCACATGCTCTAGGGGCCCTGGCAGAGGTTGC TGGACCAGGCCTTAATGTCCATCTTGGAACTGTGCTTCCTGCTTTACTGACTGGAATGGCCGACGACAATGAGGAAGTTCAAAATCTCGCCAAGGAGGCT GCAGAAACAGTGGTCCTTGTCATTGATGACGAAGGTGTTGAATTTTTACTTGGAGAGCTTCTTAAAGCAGTTGGAGATAATATGGCTTCAATCAGAAGAA GTTCAACATATCTGATAGGATACTTGTTCAAAAACAGCAAACTGTACTTGGTTGATGAGGTTCCAAATATGATATCTGCTCTCATTGTTTTACTGGGCGA TTCCGACGTAGCAACTGTTGAGATCGCGTGGGGAGCTTTATCACGGGTTCTTGATTCAGTTCCTAAAGAACTACTTTCTTCCTATATGAAACCAGTGCGT GATTCTATATCTACAGCTAGAGATAAAGAGCGCAGGAGGAAGAAGGGTGGAGCAGTTCTTATTCCAGGCTTTTGTCTTCCAAAAGCACTCAGACCAGTGC TTCCTGTATTTTTGCAAGGTTTGACAAGCGGTTCTGCTGAGCTTAGGGAGCAAGCTGCACTTGGCCTTGGTGAGATTATTGAAGTGACTAGTGAACAGGT CTTAAAAGAGTTTGTCATCCAAATTACTGGGCCTCTTATTCGTATCATAGGGGACCGCTTCCCCTGGCAGGTGAAAAATGCAATTTTATCGACCTTAATC ATCTTGATAAGAAAAGGTGGAATATCCCTGAAGCCTTTCCTTCCACAACTTCAAACAACTTTTATCAAGTGCCTACAAGACAGTACAAGAATGGTTCGAA CAAGTGCTGCCCTTGCTCTTGGGAAGCTTAGTGCACTCAGTACTAGGGTTGATCCTCTTGTGAATGACCTATTATCGAGTTTAAAGGAAGCTGATTCTGT TGTAAGAGAGGCAATACTTGCAGCCCTAAAAGGTGTCCTAAAGAATGCTGGTAAGAGCGTGAGCAGTGCTATCAAAACTCGTGTCTGCACTCAACTGATG GATCTGATTAGTCACGATGAAGACCAAACTCGAATTTCCTCTGCCTGCATGTTGGGCATCACGTCGCAATTCATGGAAGATTCCCAGCTGGCAGACCTGT TCCCAGCTGGCAGACCTGTTTCAGCAACTTGCAGACCTGCTGCCTTCTTCAAATTGGAATTCCCATCAATTTCCGCATGTCTGCAATCCTCTTTGAAGGA TGAAAAGTTTCCTCTTCGCAAAACTGCAACCAAGGCAGTGGGCAGGCTTTTGCTGCATCTAATTAGAAGCGAACCCTCGAAATCCTCAACATACATTGAT TTACTTTCATCTCTAGTTGATTCGTTGAATGATGACTCAAGTGAAGTGAGAAGAAAAGCATTATCGTCTATTAAAGCAGTCGCAAAAGCGAGCCCATCTT TTGTAACGGCCAATGTCTCGTTGATTGGTCCCGGACTTGCTGATTGTTTGAAAGACAGTAGTACACCGGTTAAGCTTGCTGCAGAAAGATGTATTCTGCA CACCTTCCAGTTGACAAAAGGCACAGAGAATGTTCAGGCGGCTCAAAAATTTATCACAGGCCTCGATGCCAGACGACTTGCTAAGTATTCTGAACATAGT GACGCCAGTGACGATAGTGAAGATGACTCCACACGTCTGTAA
AA sequence Show only first row Show all	>Lus10003101 pacid=23165951 polypeptide=Lus10003101 locus=Lus10003101.g ID=Lus10003101.BGIv1.0 annot-version=v1.0 MSIAEAAEDIWDRYGHEIGTDYSGLFKALSHVNYNVRLAAAEALAAALDEHPDSIQETLSTLFSSYLRDAGSGDNNVDAGWLGRQGVSLALHSAADVLRT KDLPVIMTFLISRALADPNTDVRGRMINASILIIDRHGKDNVSLLFPIFENYLNKKVIAQVESQGEGPGASDEETYDLVREGVVIFTGALAKHLAKDDPK VHAVVEKLLDVLNTPSEAVQRAVSDCLSPLMQSMKDDAAPLLSRLLDQLMKSDKYGDRRGAAFGLAGVVKGFGLSCLKKYGIIATLREGLVDRTSAKSRE GALLAFECLCEKLGKLFEPYVIQMLPVLLVSFSDQVVAVREAAECAARAMMAQLSVQGVKLVLPSLLKGLEDRAWRTKESSVQLLGAMAYCAPQQLSQCL PAIVPKLTEVLTDTHPKVQTAGQTALQQVGSVIKNPEISSLVPTLLTALSDPNDYTKYALDILLQTTFVNSIDAPSLALLVPIVHRGLRERSAETKKKAA QIVGNMCSLVTEPRDMIPYIGLLLPEVKKVLVDPIPEVRSVAARALGSLIRGMGEEKFPDLVPWLFDTLKSDGNNVERSGAAQGLSEVLAALGVDYFERA LPDIVRSCSHQKASVRDGYLTLFKYLPRSLGVQFQNYLQQVLPAIIDGLADENESVREAALGAGHVLVEHYAITSLPLLLPAVEDGIFNDNWRIRQSSVE LLGDLLFKVAGTSGKSLLEGGSDDEGASTEAQGRAIIEVLGRDRRNEILAALYMVRTDISLSVRQAALHVWKTIVANTPKTLKEIMPVLMSTLIASLASS SSERRQVAGRALGELVRKLGERVLPLIIPILSRGLKDPDASRRQGVCIGLSEVMGSAGRSQLLSFMDDLIPTIRVALCDSELEVRESAGLAFSTLYKSAG LQAIDEIVPTLLHALEDDETSDTALDGLKQILSVRTAAVLPHILPKLVHPPLTAFNAHALGALAEVAGPGLNVHLGTVLPALLTGMADDNEEVQNLAKEA AETVVLVIDDEGVEFLLGELLKAVGDNMASIRRSSTYLIGYLFKNSKLYLVDEVPNMISALIVLLGDSDVATVEIAWGALSRVLDSVPKELLSSYMKPVR DSISTARDKERRRKKGGAVLIPGFCLPKALRPVLPVFLQGLTSGSAELREQAALGLGEIIEVTSEQVLKEFVIQITGPLIRIIGDRFPWQVKNAILSTLI ILIRKGGISLKPFLPQLQTTFIKCLQDSTRMVRTSAALALGKLSALSTRVDPLVNDLLSSLKEADSVVREAILAALKGVLKNAGKSVSSAIKTRVCTQLM DLISHDEDQTRISSACMLGITSQFMEDSQLADLFPAGRPVSATCRPAAFFKLEFPSISACLQSSLKDEKFPLRKTATKAVGRLLLHLIRSEPSKSSTYID LLSSLVDSLNDDSSEVRRKALSSIKAVAKASPSFVTANVSLIGPGLADCLKDSSTPVKLAAERCILHTFQLTKGTENVQAAQKFITGLDARRLAKYSEHS DASDDSEDDSTRL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003101 [exp]	0	1
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10004767 [exp]	1.4	0.9802
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003102 [exp]	2.8	0.9754
AT3G22690			unknown protein		Lus10039355 [exp]	5.3	0.9239
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10006876 [exp]	6.0	0.9589
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041554 [exp]	6.0	0.9597
AT2G34357			ARM repeat superfamily protein...		Lus10041233 [exp]	6.5	0.9493
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10026402 [exp]	7.2	0.9366
AT5G42950			GYF domain-containing protein ...		Lus10032720 [exp]	9.7	0.9523
					Lus10021651 [exp]	11.3	0.9418
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10022271 [exp]	12.1	0.9464

Compare expression of checked genes

Lus10003101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.