Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64790 1238 / 0 ILA ILITYHIA (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004767 [exp] 1907 / 0 AT1G64790 3557 / 0.0 ILITYHIA (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G024200 [exp] 1421 / 0 AT1G64790 3726 / 0.0 ILITYHIA (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12074 [flax] [poplar] Gcn1_N Generalcontrol nonderepressible 1 (Gcn1) N-terminal
Representative CDS sequence Show only first row Show all	>Lus10003102 pacid=23165952 polypeptide=Lus10003102 locus=Lus10003102.g ID=Lus10003102.BGIv1.0 annot-version=v1.0 ATGTCTACCGATCTTATATCCTTGTTGATAGATGTCATCTTTAAAACTCTGGTTTCTTATGATGACCACGGATCAAGGAAAGCTGTGGATCATGTTATTA CAAAGGCTTTCAGCAACACCATGTTCATGAAAAGTTTTGCAGCGGCTCTAGTCCAGGCCATGGAAAAACAGTCAAAGTCCCGTTCTCATGTAGGCTGCTA CAGGCTTTTGAAGTGGTCATGTCTTCTTCTAACAAAGAGTCAGTTTGCTTCAGTTTCAAAGAATGCAGTATGTAGAGTAGGTGCAGCACAAGCACCTCTA CTTCATATTGTCATGCAAAGACCTTTTCGTGAGCAAAGGGCTTGCAAGCGAATATTCTTTCACCTTTTCTCACAGTCACCAGATGTCTATAAAACCTTTC TAGAGGAATTGAAGGATGCACGGATTCCTTACAAAGATAGTCCTGAATTGTTATGCCTTCTGCTGGAGTTCTCTAGATCTTCCCATTCTTTTCAAACAGT AAAGGCAGCGTTTATCGATATTTATGTTAAAGCAGTTCTAAGTTCTCGAGAAAAGCCATCAAAGGGGCTCACTGATTCCTTTCTCCCTCTTTTCTTGCAA ATGTCACATGAAGATTTTCAGAATGACGTATTTCCTTCTCTGGTGAAAATGTTGAAGCGGAATCCTGAGATTTTGCTGGAATCTGTTGCTATTTTGTTGA ACGCAGTCTCCATCGATTTGAGCAAGTTTGCTGTCGAACTTCTTTCAGTGGTACTGTCACAAGCACGTCATGCAGATGAAACTAGAAGGCTAGGGGCATT GATCATAGTGCGATGTCTAAGCCAAAAGTCTAGTAACCCTGATGCTTTAGAAGCTATGTTTAATGCTGTTAAAGCTGTACTTGGAGGCTCAGAAGGGAGG CTTCAATTTCCTTATCAGAGAATCGGCTTGTTCAATTCTCTGCAAGAGTTATCGTATGGTCCAGATGGAAAACATTTGAGCAGCATATCTTGTACAGCCT GTAGGTTTCTTTTATCAGGCTACAAGGATGAGGGAAATGAAGATTCTAAACTTGCAATCTTGTCAGCCATTGGATCATGGGGAGCAAGATCTGCAGACGC TATCCAACCAGATTTAGTGTCTTTTCTTACTACGGGTCTCAAAGAGAAGGAGGTGCTAAGGCGGGGGCATCTTCGTTGTCTTAGAGTCATATGCAAAAAT CCCGATGCAATATTGCAGATCTCATCTTTGCTTGGACCTCTCGTTCAACTTGTAAAAACGTGCTTCACTAAAGCAGTGCAACGTTTGGATGGTCTGTATG CTCTGCTTATCGTAGGAAAGATTGCAGCTTCTGACATCAAAGCAGAGGAGGCTTTGGTGAAGGAAAAGATCTGGTCCTTGGTATCCCAAAATGAACCTTC CGTTGTACAATTATCCATGGTGGCAAAACTGTCCGTTGAAGACTGTATGACATGCGTTGATCTTCTTGAAGTGCTGTTAGTGGAACACTCACGCAGAGTG TTGGAGGCTTTTCCAGTCAAATTGCTTTTACAGATTATGGTCTTTTTGCTATGTCATCCCAGTTGGGACATCCGAAAGCAGGCACATATGGCTACTAGAA AAATCATTACTGCTTCTCCCCAATTATCCGAATCTATTCTGATAGAATTCAAAAAATTTCTCTCTGCAGTCGCAGAGAAACGTTCTATTTCCATGAGGAG TTCAGATTTGTATAGTGATGCAGATAGTACATTGGATGCTCAATTTCCATTTGTTCCACCCGTGGAGATTTTGGTGAAGACTTTTTTCCTCATATCATCT GTGGTGCTTGCATCTTCTTCAAGTCTGTCTGAAAATATCTTGTTCTGCTCACATCACCCGTCCATTCTGGGTATTGCAAAAAGGGATTCGGTTTGGGAGA GGCTCCATAGGTGCCTGCGGACACAAGGGTTTGATGTGATTGCCACTATTTCTGGTGATGCTAGAAATCTGTGCAAGGTTCTACTTGGACCAGGGGGGCT GACGAGTTCAAATGCATTTGAACAAGAAGCAGCTATAAATGCGCTGTCCACGTTAATGTCCATCATGCCTAGTGATATTTATTTGGAGTTTGAGAAGGTT TTCCAGACTCCTGAAGGGATGCTTTCTGTTGAGCAGGGCGTTTATGTTCCTGAGTCTGTTATTGCCCAGAACATGAAACAGAACCATGTTAACTCTAATC ACTCCTTGAAGAGGGAGCCAGTTGGTGGGGGGAAAAAGGAATCCGGGAAAGCGACAAAGAAGGCTGATAAGGGAAAAACCGCAAAAGAAGAGGCACGCGA GATATTGCTGCAGGAGGAGTCTTCCATACGGGAGAGAGTAGAACGCATTCAGAAGAACCTGTCTTTAATGCTCAGAGCTCTCGGTGAAATGGCTGTATCT AATCCTGTGTTTGCACACAGTCAATTATCTTCACTGGTGAAGTTTGTTGATCCCTTGCTCCGATCACCTGTAGTAGGTGACGTGGCCTATGAGACATTGG TAAAGCTATCAAGATGTACTGCTGAACCACTTTGTAATTGGGCCCTTGATATTGCTACTGCATTGCGCCGAATCTCGACAGAGGAAGTTAGTATTGAATT GGATCTGATACCATCTGCTGGTGAAGGGGAGTCCCATTCAGTACCATCCATAGGCATCTTTGAGAGGATCGTTTGTGGCTTATCAATATCTTGCAAATCC GGACCTCTTCCTGTAGACTCATTTACTTTTGTTTTTCCAATAATGGAACGGATTCTATTATCATCTAAGAGGACTGGACTTCACGATGATGTGCTGCGAG TTATATACATGCACATGGATGCTCTGTTACCCCTTCCTAGGCTCAGAATGCTGTCGGCTCTTTATCATGTTCTTGGGATTGTCCCGGCCTATCAAGGTTC TATTGGACCAGCATTGAATGAGCTGTGCCTTGGTTTGCGGCCAGAAGAAATTGCTCCGGCTTTATATGGTGTGTATGCTAAAGATGTTCATGTCCGAATG GCCTGCTTAAATGCCAAAAAATGCATCCCTGCTGTCTCCAGCCGCTCTATCCCTCAACATGTCGAAGTAGCAACTGGCATTTGGATTGCTTTGCATGATC CTGAAAAGGTTGGTATTTTAGCTGTTCATAAATGTTATCTTGTAGTATTTAGTCTTCTGCCTTTTCTCATTGATGGCAAGATCTCCTTCGCCGTAAACCC ACAACCCCCCTTGACATCTGGAAAACTGATGAAAGCTGGTGATTAG
AA sequence Show only first row Show all	>Lus10003102 pacid=23165952 polypeptide=Lus10003102 locus=Lus10003102.g ID=Lus10003102.BGIv1.0 annot-version=v1.0 MSTDLISLLIDVIFKTLVSYDDHGSRKAVDHVITKAFSNTMFMKSFAAALVQAMEKQSKSRSHVGCYRLLKWSCLLLTKSQFASVSKNAVCRVGAAQAPL LHIVMQRPFREQRACKRIFFHLFSQSPDVYKTFLEELKDARIPYKDSPELLCLLLEFSRSSHSFQTVKAAFIDIYVKAVLSSREKPSKGLTDSFLPLFLQ MSHEDFQNDVFPSLVKMLKRNPEILLESVAILLNAVSIDLSKFAVELLSVVLSQARHADETRRLGALIIVRCLSQKSSNPDALEAMFNAVKAVLGGSEGR LQFPYQRIGLFNSLQELSYGPDGKHLSSISCTACRFLLSGYKDEGNEDSKLAILSAIGSWGARSADAIQPDLVSFLTTGLKEKEVLRRGHLRCLRVICKN PDAILQISSLLGPLVQLVKTCFTKAVQRLDGLYALLIVGKIAASDIKAEEALVKEKIWSLVSQNEPSVVQLSMVAKLSVEDCMTCVDLLEVLLVEHSRRV LEAFPVKLLLQIMVFLLCHPSWDIRKQAHMATRKIITASPQLSESILIEFKKFLSAVAEKRSISMRSSDLYSDADSTLDAQFPFVPPVEILVKTFFLISS VVLASSSSLSENILFCSHHPSILGIAKRDSVWERLHRCLRTQGFDVIATISGDARNLCKVLLGPGGLTSSNAFEQEAAINALSTLMSIMPSDIYLEFEKV FQTPEGMLSVEQGVYVPESVIAQNMKQNHVNSNHSLKREPVGGGKKESGKATKKADKGKTAKEEAREILLQEESSIRERVERIQKNLSLMLRALGEMAVS NPVFAHSQLSSLVKFVDPLLRSPVVGDVAYETLVKLSRCTAEPLCNWALDIATALRRISTEEVSIELDLIPSAGEGESHSVPSIGIFERIVCGLSISCKS GPLPVDSFTFVFPIMERILLSSKRTGLHDDVLRVIYMHMDALLPLPRLRMLSALYHVLGIVPAYQGSIGPALNELCLGLRPEEIAPALYGVYAKDVHVRM ACLNAKKCIPAVSSRSIPQHVEVATGIWIALHDPEKVGILAVHKCYLVVFSLLPFLIDGKISFAVNPQPPLTSGKLMKAGD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003102 [exp]	0	1
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10004767 [exp]	1.0	0.9859
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10025169 [exp]	1.7	0.9801
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041554 [exp]	2.4	0.9802
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003101 [exp]	2.8	0.9754
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10006876 [exp]	3.2	0.9744
AT2G07820			unknown protein		Lus10015035 [exp]	4.2	0.9728
					Lus10004082 [exp]	4.2	0.9673
AT5G42950			GYF domain-containing protein ...		Lus10032720 [exp]	5.7	0.9666
AT3G55160			unknown protein		Lus10007253 [exp]	5.9	0.9723
					Lus10009498 [exp]	6.0	0.9658

Compare expression of checked genes

Lus10003102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.