Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04290 527 / 0 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT5G33370 521 / 0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G18430 489 / 2e-174 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G28780 472 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 247 / 8e-79 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 243 / 1e-77 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G15720 227 / 2e-71 GLIP7 GDSL-motif lipase 7 (.1) AT1G71250 224 / 3e-70 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 221 / 3e-69 SGNH hydrolase-type esterase superfamily protein (.1) AT1G29660 219 / 3e-68 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003108 [exp] 343 / 1e-117 AT5G18430 372 / 4e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011279 [exp] 314 / 9e-97 AT5G20960 1315 / 0.0 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2) Lus10004774 [exp] 272 / 1e-90 AT5G18430 311 / 3e-106 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10004770 [exp] 246 / 7e-82 AT4G28780 181 / 3e-57 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016775 [exp] 246 / 1e-78 AT2G23540 592 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10022471 [exp] 244 / 5e-78 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10039877 [exp] 242 / 4e-77 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10018641 [exp] 237 / 4e-75 AT5G37690 516 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Lus10005238 [exp] 224 / 3e-70 AT2G23540 369 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G051000 [exp] 581 / 0 AT3G04290 543 / 0.0 Li-tolerant lipase 1 (.1) Potri.019G024400 [exp] 570 / 0 AT3G04290 538 / 0.0 Li-tolerant lipase 1 (.1) Potri.019G024800 [exp] 528 / 0 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G051100 [exp] 527 / 0 AT5G33370 563 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024600 [exp] 526 / 0 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024700 [exp] 516 / 0 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.002G253400 [exp] 507 / 0 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.017G130100 [exp] 238 / 1e-75 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G086700 [exp] 237 / 2e-75 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.007G036300 [exp] 227 / 2e-71 AT2G23540 554 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10003106 pacid=23165935 polypeptide=Lus10003106 locus=Lus10003106.g ID=Lus10003106.BGIv1.0 annot-version=v1.0 ATGGCAAACTCTCAGTGGTTGGCCATGGCGGTAGTTTTGGTAATCATGGGAGGATCAGCTCCTCAGGTGAGTGACGCAGCCAGAGCTTTCTTTGTGTTTG GGGATTCGTTGGTCGACAATGGCAACAATAACTACCTTGCCACCACCGCACGCGCTGACGCGCCGCCGTATGGGGTTGACTACCCCACCCACGGCGCCAC CGGCCGCTTCTCTAACGGCTTCAACATCCCTGACCTCCTTAGTCAAGCAATTGGTGCATCGGAGCCAACATTGCCATATCTAAACCCAGCGCTGAACGGG CAACGCCTCCTCGTCGGCGCCAACTTCGCCTCCGCCGGAATCGGCATTCTCAACGACACCGGCATCCAATTCCTGAATATAATAAGGATAACGAGGCAGC TGCAGTATTTCCAGCAATATCAGCAGAGGTTGAGTGGGCTGATTGGGCCGGAACAGGCCCAACGGCTAGTGAGGGAATCACTTGTCCTCATTACCTTGGG AGGCAATGATTTCGTCAACAACTATTATTTGGTTCCTTTTTCCGCCAGATCTCGCCAGTTTGCTCTCCCTGACTACGTCGTTTACCTCATCTCCGAATAC CGCAAGATTCTCGCGAGGTTGTACGAGCTGGGAGCGAGAAGAGTGCTGGTGACAGGAACCGGACCGCTAGGGTGCGTGCCAGCAGAACGCGCAATGCGCG GCCGAAATGGAGAATGTTCTGTCGAGCTGCAGAGAGCGGCCGGGTTGTTCAACCCGCAGCTGATCGACATGGTCAACAGTATAAACGCCGAGATCGGATC CAACGTGTTCATCGCCGCCAATGCCCACGAAATGAACATGGATTTCGTCTCCAACCCTCAGGCTTACGGGTTTGTGACATCGAAGGTAGCATGTTGTGGG CAAGGGCCATACAACGGACTCGGGCTATGCACACCGGCATCCAACTTGTGCCCGAACAGAGACATCTACGCATTCTGGGATGCATTCCACCCGACGGAGA GAGCTAATCGCATCATCGTTCAGAGCATCCTAACCGGGGACACAAGGTACATGCATCCAATGAACCTCAGCACCGTCCTGGCCATGGACAATTTAAGAAC CTGA
AA sequence Show only first row Show all	>Lus10003106 pacid=23165935 polypeptide=Lus10003106 locus=Lus10003106.g ID=Lus10003106.BGIv1.0 annot-version=v1.0 MANSQWLAMAVVLVIMGGSAPQVSDAARAFFVFGDSLVDNGNNNYLATTARADAPPYGVDYPTHGATGRFSNGFNIPDLLSQAIGASEPTLPYLNPALNG QRLLVGANFASAGIGILNDTGIQFLNIIRITRQLQYFQQYQQRLSGLIGPEQAQRLVRESLVLITLGGNDFVNNYYLVPFSARSRQFALPDYVVYLISEY RKILARLYELGARRVLVTGTGPLGCVPAERAMRGRNGECSVELQRAAGLFNPQLIDMVNSINAEIGSNVFIAANAHEMNMDFVSNPQAYGFVTSKVACCG QGPYNGLGLCTPASNLCPNRDIYAFWDAFHPTERANRIIVQSILTGDTRYMHPMNLSTVLAMDNLRT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10003106 [exp]	0	1
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10004770 [exp]	1.0	0.9478
AT1G80660		AHA9	H\(+\)-ATPase 9, H\(+\)-ATPase...		Lus10024105 [exp]	2.4	0.9366
AT3G05470			Actin-binding FH2 (formin homo...		Lus10015175 [exp]	3.7	0.9127
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10026927 [exp]	4.2	0.9004
AT3G22800			Leucine-rich repeat (LRR) fami...		Lus10039362 [exp]	4.5	0.9370
AT4G21750	HD	ATML1	MERISTEM LAYER 1, Homeobox-leu...		Lus10006765 [exp]	6.3	0.9215
AT2G19540			Transducin family protein / WD...		Lus10025341 [exp]	7.7	0.8793
AT3G06460			GNS1/SUR4 membrane protein fam...		Lus10020825 [exp]	8.5	0.9075
AT3G05470			Actin-binding FH2 (formin homo...		Lus10031496 [exp]	8.7	0.9042
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10017468 [exp]	9.8	0.9031

Compare expression of checked genes

Lus10003106 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.