Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G28780 194 / 9e-62 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G04290 192 / 5e-61 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT5G33370 180 / 2e-56 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT5G18430 180 / 4e-56 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 117 / 1e-31 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 107 / 5e-28 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G16230 104 / 6e-28 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 106 / 8e-28 SGNH hydrolase-type esterase superfamily protein (.1) AT5G41890 102 / 3e-26 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G06990 98 / 1e-24 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004771 [exp] 298 / 4e-105 AT3G04290 213 / 5e-69 Li-tolerant lipase 1 (.1) Lus10004774 [exp] 194 / 5e-63 AT5G18430 311 / 3e-106 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003106 [exp] 196 / 3e-62 AT3G04290 551 / 0.0 Li-tolerant lipase 1 (.1) Lus10004770 [exp] 181 / 3e-59 AT4G28780 181 / 3e-57 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003108 [exp] 160 / 4e-49 AT5G18430 372 / 4e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10011279 [exp] 165 / 1e-47 AT5G20960 1315 / 0.0 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2) Lus10003579 [exp] 140 / 2e-39 AT3G04290 248 / 2e-77 Li-tolerant lipase 1 (.1) Lus10015950 [exp] 131 / 7e-38 AT3G04290 135 / 1e-41 Li-tolerant lipase 1 (.1) Lus10005238 [exp] 111 / 2e-29 AT2G23540 369 / 2e-126 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G024600 [exp] 208 / 3e-67 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024400 [exp] 206 / 2e-66 AT3G04290 538 / 0.0 Li-tolerant lipase 1 (.1) Potri.002G253400 [exp] 201 / 2e-64 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G051000 [exp] 201 / 4e-64 AT3G04290 543 / 0.0 Li-tolerant lipase 1 (.1) Potri.019G024800 [exp] 196 / 3e-62 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024700 [exp] 196 / 3e-62 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G051100 [exp] 187 / 5e-59 AT5G33370 563 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.017G130100 [exp] 106 / 7e-28 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.013G153000 [exp] 105 / 2e-27 AT2G30220 355 / 1e-121 GDSL-like Lipase/Acylhydrolase family protein (.1) Potri.004G086700 [exp] 101 / 4e-26 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10003107 pacid=23165954 polypeptide=Lus10003107 locus=Lus10003107.g ID=Lus10003107.BGIv1.0 annot-version=v1.0 ATGGCGACTATGATCCTAACCCTAGTCATGGCCGTTGCCATGATGGGGAGTAGTAGCTTGGGGGTCGTCAATGCGGCTCCGAGGGCATTTTTCGTGTTCG GAGATTCGCTGGTCGACAATGGGAACAACAACTACTTAGCCACCACTGCTCGTGCTGACTCGCCGCCTTATGGGGTCGACTACCCGACTGGGCGCCCCAC TGGCCGCTTTTCCAATGGCTATAACATCCCTGACTTCATCAGTCAAGCTCTTGGAGCAGAGTCCACATTGCCATACTTGAGTCCAGAGCTTACAGGGGAC AGGTTGCTTGTGGGTGCCAATTTTGCTTCTGCTGGGATTGGGGTCTTGAATGACACTGGAATTCAGTTTATAAACATAATAAGGATGTTCCAACAGTACC AGTACTTCGAGCAGTACCAGCAGCGACTGGCCGCACTCATCGGGCCAGAACAGGCTCAGCAGCATATCAGATGGGTCAAATTAGGATTAGACTGA
AA sequence Show only first row Show all	>Lus10003107 pacid=23165954 polypeptide=Lus10003107 locus=Lus10003107.g ID=Lus10003107.BGIv1.0 annot-version=v1.0 MATMILTLVMAVAMMGSSSLGVVNAAPRAFFVFGDSLVDNGNNNYLATTARADSPPYGVDYPTGRPTGRFSNGYNIPDFISQALGAESTLPYLSPELTGD RLLVGANFASAGIGVLNDTGIQFINIIRMFQQYQYFEQYQQRLAALIGPEQAQQHIRWVKLGLD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10003107 [exp]	0	1
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10004771 [exp]	1.0	0.9980
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Lus10032278 [exp]	1.4	0.9827
AT5G25390	AP2_ERF	SHN3, SHN2	shine3, Integrase-type DNA-bin...		Lus10002912 [exp]	2.0	0.9577
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Lus10005413 [exp]	2.4	0.9771
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Lus10034614 [exp]	3.2	0.9509
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Lus10024644 [exp]	4.0	0.9355
AT5G11420			Protein of unknown function, D...		Lus10008080 [exp]	10.1	0.8847
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10019510 [exp]	10.9	0.9404
AT4G29680			Alkaline-phosphatase-like fami...		Lus10007981 [exp]	11.0	0.9413
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10002015 [exp]	11.0	0.9120

Compare expression of checked genes

Lus10003107 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.