Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18430 358 / 9e-124 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G33370 355 / 2e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT3G04290 351 / 6e-121 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT4G28780 336 / 6e-115 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G50400 157 / 3e-45 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G23540 157 / 5e-45 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT2G42990 141 / 3e-39 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G29670 138 / 4e-38 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G37690 134 / 1e-36 SGNH hydrolase-type esterase superfamily protein (.1) AT5G08460 133 / 5e-36 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004774 [exp] 371 / 1e-130 AT5G18430 311 / 3e-106 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003106 [exp] 331 / 8e-113 AT3G04290 551 / 0.0 Li-tolerant lipase 1 (.1) Lus10011279 [exp] 195 / 8e-56 AT5G20960 1315 / 0.0 ARABIDOPSIS THALIANA ALDEHYDE OXIDASE 1, aldehyde oxidase alpha, aldehyde oxidase 1 (.1.2) Lus10016775 [exp] 166 / 2e-48 AT2G23540 592 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10022471 [exp] 166 / 2e-48 AT2G23540 589 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10003107 [exp] 149 / 2e-44 AT3G04290 213 / 6e-69 Li-tolerant lipase 1 (.1) Lus10004771 [exp] 146 / 3e-43 AT3G04290 213 / 5e-69 Li-tolerant lipase 1 (.1) Lus10029958 [exp] 142 / 2e-39 AT2G42990 448 / 1e-158 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10016929 [exp] 140 / 2e-38 AT1G71691 473 / 2e-167 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G024700 [exp] 398 / 2e-139 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024800 [exp] 387 / 2e-134 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G051100 [exp] 384 / 1e-133 AT5G33370 563 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024600 [exp] 376 / 1e-130 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.002G253400 [exp] 352 / 4e-121 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.013G051000 [exp] 345 / 1e-118 AT3G04290 543 / 0.0 Li-tolerant lipase 1 (.1) Potri.019G024400 [exp] 345 / 2e-118 AT3G04290 538 / 0.0 Li-tolerant lipase 1 (.1) Potri.017G130100 [exp] 150 / 1e-42 AT5G37690 526 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.004G086700 [exp] 147 / 2e-41 AT5G37690 527 / 0.0 SGNH hydrolase-type esterase superfamily protein (.1) Potri.007G036300 [exp] 144 / 3e-40 AT2G23540 554 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Lus10003108 pacid=23165953 polypeptide=Lus10003108 locus=Lus10003108.g ID=Lus10003108.BGIv1.0 annot-version=v1.0 ATGATGCCAACAACAATACTAGTTATAGTCCTCGTCATCCTGTGCATGGAACTCCATAGCAATGCTGAAGCAAGAGCATTCTTCGTGTTCGGAGATTCCC TCGTCGACAGTGGAAACAACAACTACCTCGCCACCACTGCTCGCGCCGATTCCCCTCCTTATGGCATCGACTACCCGACTCTTCGCCCCACCGGCCGATT CTCCAACGGCCTCAACATTCCTGACCTTATAATCAGAGCCACCTCTGCCTTACTTGTCTCCCGAGCTGACTGGGCAGAGGCTGCTGAATGTGCCAACTTT GCTTCTGCTGGAATTGGAATCCTCAACGATACTGGAGTCCAATTTATCAACATCATCAGAATGTACCAGCAGCTGGAGAACTTCCAGCAATACCAGCGCC GACTTGGAGCCCTAATCGGAGCAAATCGAGCCAAGAGACTCGTAAAGGGAGCAATAGTCTTGATAACAGTGGGTGGGAACGATTTTGTAAACAACTATTA CCTAGTGCCTTACTCTGCCAGGTCTACCCAAATGCCTCTCCCAGATTATGTCAAATATGTCATCTCTGAGTACAAAAAGTTACTAAAGGTGCTGACTGGA CTCAATAGAGAGATTGGGAGGGATGTGTTCATTGGCGTCAATACCGGACGGATGCATATGGAGTTTGTTACCAACCCTGGAGATTATGGATTTGCAACAT CAAAGGTGGCATGTTGTGGACAAGGACCCTATAATGGTTTAGGACTATGTACATTCGCGTCCAATTTATGTCGTAACCGGAATCTCAATGCTTTTTGGGA TGCGTTCCATCCGTCCGAAAAGGCTAACAGGCTCATAGTTCAACAGATGTTCTCTGGAAGTGCAGAGTTCATGAACCCTATGAATCTTAACACGATCATG AAATTAGATGCTATGACGACATAA
AA sequence Show only first row Show all	>Lus10003108 pacid=23165953 polypeptide=Lus10003108 locus=Lus10003108.g ID=Lus10003108.BGIv1.0 annot-version=v1.0 MMPTTILVIVLVILCMELHSNAEARAFFVFGDSLVDSGNNNYLATTARADSPPYGIDYPTLRPTGRFSNGLNIPDLIIRATSALLVSRADWAEAAECANF ASAGIGILNDTGVQFINIIRMYQQLENFQQYQRRLGALIGANRAKRLVKGAIVLITVGGNDFVNNYYLVPYSARSTQMPLPDYVKYVISEYKKLLKVLTG LNREIGRDVFIGVNTGRMHMEFVTNPGDYGFATSKVACCGQGPYNGLGLCTFASNLCRNRNLNAFWDAFHPSEKANRLIVQQMFSGSAEFMNPMNLNTIM KLDAMTT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18430			GDSL-like Lipase/Acylhydrolase...		Lus10003108 [exp]	0	1

Compare expression of checked genes

Lus10003108 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.