Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G18410 283 / 4e-87 ATSRA1, KLK, PIRP, SRA1, PIR121 PIROGI 121, PIROGI, KLUNKER, transcription activators (.1.2.3) AT5G18404 58 / 8e-11 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004776 [exp] 357 / 3e-114 AT5G18410 2154 / 0.0 PIROGI 121, PIROGI, KLUNKER, transcription activators (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G025200 [exp] 306 / 1e-95 AT5G18410 2230 / 0.0 PIROGI 121, PIROGI, KLUNKER, transcription activators (.1.2.3) Potri.013G051200 [exp] 302 / 4e-94 AT5G18410 2241 / 0.0 PIROGI 121, PIROGI, KLUNKER, transcription activators (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05994 [flax] [poplar] FragX_IP Cytoplasmic Fragile-X interacting family
Representative CDS sequence Show only first row Show all	>Lus10003109 pacid=23165937 polypeptide=Lus10003109 locus=Lus10003109.g ID=Lus10003109.BGIv1.0 annot-version=v1.0 ATGAGAGACAACAAGATCTCCGTTGTCGTTGCATCGACTAAGCTCGCCGCAATCGAGGAGGAGGAAAACGAAGTCGACAGAGAGCTGATCAACAACTCTT CTTCGCCGGATCCGTCATCTGCTGCGAAAATCGGAGCACATTCGAGCTGCTTTTCTACTCTGGGTGACAGTCCTATTGTTCGCCTCTTCAAAGCAGCTAG TGCTGTTGTATCCAACCCTGGGTGTCCGAATCCTACACCGTTCTATACCATGTCGAAACGGGCAGAGGCTGCAGATCTTCTGTACAAGGCCAACATAAAC AGTGGAAGTGTGCTGGAGTATGCCCTTGCATTTACTAGTGCAGCCCTTGATAAATTTTGCACAAAGTGGAGTACAGCTCCAAAGACCGGGTTCATCGACA TAACAACTTCCAAGGATTTCTACCGTATATATAGTGACCTTCAAATCACAAGTAAAAACAAATATCCGTCCCTTTGGCCCTTCCTTGCTCTAGCCATCTT AATGAATTCCGGCATTATGATTCCAATCTATATGCTCTTTCAGGGGTATCTGGAGGATTCAGCTCAATCATCATCCGGTAACCACAACATACTCGGCGAT TCCATAGCTTGGGGTGGTTGCTGTTGGGGCGCAGCGGACGATAATAAACTGCAATTCGAGCAGTTCGATTTCTGCTATAAAGTACTAAATGTTGCCGAGG GTGAAGCTGGGTCACTGGCACTAACACATAGGAGTCCTTATACACTCCAGGGATGGGATACTCTACTAGAGGCGATGAAGAAAGCAAGGAGGTTGAACAA CCATGTGTTCTCGATGCTAAAAGCGCGCTGCCCTCTCGAGGACAAGACAGCATGCGCCATCAAGTAA
AA sequence Show only first row Show all	>Lus10003109 pacid=23165937 polypeptide=Lus10003109 locus=Lus10003109.g ID=Lus10003109.BGIv1.0 annot-version=v1.0 MRDNKISVVVASTKLAAIEEEENEVDRELINNSSSPDPSSAAKIGAHSSCFSTLGDSPIVRLFKAASAVVSNPGCPNPTPFYTMSKRAEAADLLYKANIN SGSVLEYALAFTSAALDKFCTKWSTAPKTGFIDITTSKDFYRIYSDLQITSKNKYPSLWPFLALAILMNSGIMIPIYMLFQGYLEDSAQSSSGNHNILGD SIAWGGCCWGAADDNKLQFEQFDFCYKVLNVAEGEAGSLALTHRSPYTLQGWDTLLEAMKKARRLNNHVFSMLKARCPLEDKTACAIK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18410		ATSRA1, KLK, PI...	PIROGI 121, PIROGI, KLUNKER, t...		Lus10003109 [exp]	0	1
					Lus10028460 [exp]	6.2	0.8735
AT2G27410	B3		Domain of unknown function (DU...		Lus10038980 [exp]	7.2	0.8578
AT2G43610			Chitinase family protein (.1)		Lus10001772 [exp]	8.6	0.9149
					Lus10022865 [exp]	9.1	0.8212
AT1G68390			Core-2/I-branching beta-1,6-N-...		Lus10036610 [exp]	9.6	0.8915
					Lus10009439 [exp]	11.7	0.9014
AT3G03080			Zinc-binding dehydrogenase fam...		Lus10003638 [exp]	16.0	0.9003
AT3G19020			Leucine-rich repeat (LRR) fami...		Lus10012047 [exp]	19.8	0.8984
AT1G75750		GASA1	GAST1 protein homolog 1 (.1.2)		Lus10034524 [exp]	21.1	0.8965
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10028844 [exp]	23.5	0.8955

Compare expression of checked genes

Lus10003109 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.