Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G26820 125 / 1e-35 RNS3 ribonuclease 3 (.1) AT1G14220 119 / 6e-33 Ribonuclease T2 family protein (.1) AT2G02990 119 / 7e-33 RNS1, ATRNS1 ribonuclease 1 (.1) AT1G14210 92 / 2e-22 Ribonuclease T2 family protein (.1) AT2G39780 81 / 4e-18 RNS2 ribonuclease 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035881 [exp] 351 / 4e-124 AT2G02990 130 / 4e-37 ribonuclease 1 (.1) Lus10035882 [exp] 349 / 3e-123 AT1G14220 128 / 1e-36 Ribonuclease T2 family protein (.1) Lus10022385 [exp] 222 / 2e-71 AT1G26820 92 / 2e-21 ribonuclease 3 (.1) Lus10027978 [exp] 125 / 3e-35 AT1G14220 330 / 4e-116 Ribonuclease T2 family protein (.1) Lus10030468 [exp] 117 / 2e-32 AT2G02990 341 / 3e-120 ribonuclease 1 (.1) Lus10012823 [exp] 117 / 4e-32 AT2G02990 334 / 2e-117 ribonuclease 1 (.1) Lus10015409 [exp] 75 / 4e-16 AT1G14220 79 / 8e-18 Ribonuclease T2 family protein (.1) Lus10041084 [exp] 70 / 5e-14 AT2G39780 306 / 2e-104 ribonuclease 2 (.1.2) Lus10023371 [exp] 69 / 5e-14 AT1G14220 76 / 1e-16 Ribonuclease T2 family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G168700 [exp] 120 / 2e-33 AT2G02990 337 / 2e-118 ribonuclease 1 (.1) Potri.008G086700 [exp] 117 / 3e-32 AT2G02990 310 / 8e-108 ribonuclease 1 (.1) Potri.008G086800 [exp] 115 / 1e-31 AT1G26820 288 / 1e-99 ribonuclease 3 (.1) Potri.014G174400 [exp] 84 / 3e-19 AT2G39780 371 / 5e-131 ribonuclease 2 (.1.2) Potri.013G134400 [exp] 70 / 7e-14 AT2G02990 82 / 4e-18 ribonuclease 1 (.1) Potri.010G168600 [exp] 59 / 6e-11 AT1G26820 147 / 1e-45 ribonuclease 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00445 [flax] [poplar] Ribonuclease_T2 Ribonuclease T2 family
Representative CDS sequence Show only first row Show all	>Lus10003110 pacid=23165950 polypeptide=Lus10003110 locus=Lus10003110.g ID=Lus10003110.BGIv1.0 annot-version=v1.0 ATGGGTTTGACGTCGGTGATAGTGCTAGGGCAGCTGGTGCTGGTGCTGGTGTTAGCTACCACTAGTACAAATGCCCAGAACTTTGATTTCTTTTACTTAG TGATGCAATGGCCTCCCGCATACTGCAACCAACGTCGAGCCAATTGCAGGACTCCAATCATCAACAACAGGTTTACCATTCATGGAATGTGGCCTCAGAA GAACAATGGCCAAAGCCCACAAAATTGTCCTGGTTCTGTCCCTGACGTCCGAAGAAGCGGACGTGTGGATGCACCGACGATGGCCCTGCTAGACACACAC TGGCCGAATCTACAGCGACCGCCGAACAGCGTGTTTTGGACGTACGAGTGGAATAAGCACGGAACCTGCTCCCGTTGGACCCTACAAAGGTACTTCCGAA CGGCGGTTGACCGTGCTGTAAATGTGAACGTGTTCCAGAAGCTAGCCACTGCAGGTATCCGGCCCAGTAACAGGTTATATCGAATCAACGCGATCCGTAA CTCGTTAGGGGCATACAACCCCGTAGTGAACTGCAACAGAAATAGTCGGCGGCGTGTGAATCAGATCAAAGAGATATGGGTATGTGTTCAAAAAGATGGA TCCCGTCTAGTCAGGTGCCCACGTGGATCTCGCGCGGCTCGAAACTGCGGCACTGGCGCCAACCCAAATGTCCTCTTTCCTTCTTAA
AA sequence Show only first row Show all	>Lus10003110 pacid=23165950 polypeptide=Lus10003110 locus=Lus10003110.g ID=Lus10003110.BGIv1.0 annot-version=v1.0 MGLTSVIVLGQLVLVLVLATTSTNAQNFDFFYLVMQWPPAYCNQRRANCRTPIINNRFTIHGMWPQKNNGQSPQNCPGSVPDVRRSGRVDAPTMALLDTH WPNLQRPPNSVFWTYEWNKHGTCSRWTLQRYFRTAVDRAVNVNVFQKLATAGIRPSNRLYRINAIRNSLGAYNPVVNCNRNSRRRVNQIKEIWVCVQKDG SRLVRCPRGSRAARNCGTGANPNVLFPS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G26820		RNS3	ribonuclease 3 (.1)		Lus10003110 [exp]	0	1
AT1G26820		RNS3	ribonuclease 3 (.1)		Lus10022385 [exp]	1.7	0.8422
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10021392 [exp]	2.0	0.8406
AT2G23540			GDSL-like Lipase/Acylhydrolase...		Lus10016918 [exp]	5.1	0.8036
					Lus10033046 [exp]	8.9	0.7781
AT3G26040			HXXXD-type acyl-transferase fa...		Lus10005361 [exp]	9.2	0.8026
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10011883 [exp]	19.9	0.8255
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10000217 [exp]	26.3	0.7464
AT1G47960		ATC/VIF1, C/VIF...	cell wall / vacuolar inhibitor...		Lus10016318 [exp]	26.7	0.8076
AT4G35680			Arabidopsis protein of unknown...		Lus10041833 [exp]	30.7	0.7867
					Lus10035753 [exp]	36.6	0.8134

Compare expression of checked genes

Lus10003110 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.