Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13070 804 / 0 CBS domain-containing protein / transporter associated domain-containing protein (.1) AT1G55930 800 / 0 CBS domain-containing protein / transporter associated domain-containing protein (.1) AT2G14520 73 / 3e-13 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G33700 67 / 1e-11 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G14230 55 / 2e-07 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT4G14240 53 / 5e-07 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) AT1G47330 50 / 6e-06 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) AT1G03270 48 / 2e-05 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004777 [exp] 1202 / 0 AT1G55930 884 / 0.0 CBS domain-containing protein / transporter associated domain-containing protein (.1) Lus10005259 [exp] 66 / 6e-11 AT2G14520 679 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012476 [exp] 58 / 2e-08 AT2G14520 591 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10027528 [exp] 58 / 2e-08 AT5G52790 560 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10012375 [exp] 57 / 2e-08 AT1G03270 627 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10039289 [exp] 55 / 1e-07 AT5G52790 557 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10030665 [exp] 55 / 1e-07 AT2G14520 498 / 3e-178 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10020494 [exp] 55 / 2e-07 AT2G14520 538 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Lus10032715 [exp] 54 / 4e-07 AT1G47330 646 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G362100 [exp] 934 / 0 AT1G55930 858 / 0.0 CBS domain-containing protein / transporter associated domain-containing protein (.1) Potri.001G288000 [exp] 64 / 2e-10 AT2G14520 620 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.009G082300 [exp] 63 / 3e-10 AT2G14520 593 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.014G012400 [exp] 58 / 1e-08 AT2G14520 516 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.017G147900 [exp] 58 / 1e-08 AT5G52790 580 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1) Potri.010G030200 [exp] 57 / 3e-08 AT4G14240 611 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.008G202100 [exp] 55 / 1e-07 AT4G14240 632 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1), CBS domain-containing protein with a domain of unknown function (DUF21) (.2) Potri.014G196900 [exp] 52 / 2e-06 AT1G47330 575 / 0.0 CBS domain-containing protein with a domain of unknown function (DUF21) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00571 [flax] [poplar] CBS CBS domain PF03471 [flax] [poplar] CorC_HlyC Transporter associated domain PF01595 [flax] [poplar] DUF21 Cyclin M transmembrane N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10003111 pacid=23165942 polypeptide=Lus10003111 locus=Lus10003111.g ID=Lus10003111.BGIv1.0 annot-version=v1.0 ATGGAGATTGCGTTCGAGTCCTCATTTCTGGGTCGACCCGTGTCCGTTTCAGGATCCAAGTTCTCGTCTTTGCTGCGATACAGTCAGGTAGCAAAGCTAC CATGCAAGGTCTCTAGTAAGAATTACCACTACCGTGCTCGACTCTCTTCAAAATTTGTCAATCCATGCTGTTCTGGAGCTGCTGAGCTGAATAATTGGAG TGTTCAGAGAACCCGTGTGTTTGGAAGTATAATAGCTAGTTCGAGTTTGCTAGGAAATCATGCTACTGGAGAATCGGTTAGCGGATGTAATGTGACTTCG GATGCGAACTGGGAACTGATCATTGTGCTGTTGAAAAGGGGTGTTGTTCTGGGGGCACTGGTATGTGGGATACTGATGTTTGGATACCAACGGGTGCTTG CTGCGGAAGGAGTTTCAAATCCGGGCTATGGAGTTAGTGGGCAAAACATTCTGCTGCTCAAGAACTCTTGGCCAAGGCTGCAGCAGCTCCTCACCGTTTT CAAAGAGCAGGGTTTGATATTAGCTGCACTTTTGGGTTTATCTGCATTTTTCTCCATGGCTGAGACTTCTATAACCACGCTGTGGCCGTGGAAGGTCCGT GAACTAGCAGAGAAAGATTCTGAGGATGGTGTCTTCAAGCTACTTCGCAAGGATGTCACTCGTTTTCTGACCACTATTCTCATTGGCACAACGGTTGTCA ATATTGCGGCCACTGCATTGGTCACTGAAGCAGCCACAACAATATTTGGTGAAGCTGGTGTCAGTGCGGCCACAGGAGTGATGACTGTTGCTATATTGCT CCTCACAGAGATTACTCCTAAAAGTATAGCCGTTCACAATGCCACAGAAGTTGCTAAGTTTGTGGTCAGGCCAGTGGCTTGGCTTTCACTGGTTCTCTAT CCCGTAGGCAGAGTTGTCACTTACCTATCAATGGGAATGCTGAAAATTCTTGGGGTGAAGCTGATTCTTGCAGTTTCCCCCTTACTTTGTGAACCATACG TCACCGAGGATGAGTTAAAGTTGATGTTGCGAGGGGCAGAGCTAAGTGGGGCAATAGAGGAGGAAGAGCAGGATATGATTGAGAATGTGTTGGAGATTAA GGATACACATGTAAGAGAGGTGATGACACCTCTTGTTGATGTTTTTGCAATTGATGCGGGTGCAACACTCATTGATTTTCACGAACTGTGGGTGACACAT CAATATTCAAGGGTACCTGTTTTTGAGCAGCGCGTTGACAATATTGTGGGCATTGCCTATGCAATGGATCTGCTGGATTATGTACAGAAGGGTGAGCTAC TAGAAAGCACAGTTGTGGGAGATATGGCTCACAAACCTGCATATTTTGTGCCTGATTCAATGTCAGTCTGGAATCTTCTCAGAGAATTCCGGATAAGGAA GGTTCACATGGCTGTTGTTCTTAACGAATATGGCGGTACCGTTGGATTGGTAACTCTAGAAGATGTTGTTGAAGAGATTGTTGGTGAAATCTTTGATGAA AATGATTCAAAGGAGGAGATACAAAAGAAAACTGGGTACATAGTAAGGCGAGCAGAAGGAGTGTACGATGTTGATGCCAATATATCTACAGATCAACTCT CTGAAGATTTAAACATAAAAATGCCGGAGGGTCATCAGTATGAGACAGTATCAGGATTTATATGCGAGGCATTTGGATACATTCCAAGGACAGGCGAGAG TATCAAAGTAGTTCTCGAAAAGGAAACTGAAGAAGATGAGGATGCCCAGGGCATTTCTAATCGAGAACAGCATGAGAAGCATATGATATACAAGCTTGAG GTATTGGCTGGAAATGCCAGAAAGGTGAGTGCAGTCCGGTTCGAACGGATACAAAATGGTGACGAGGCAGTGGCTGCCAAAGAGGTAACTCGCTTGCTTC CCAAGTTCCGGAAGAGAAAACGGAGGAGTGATAAAGAGTCGGATGGTGATGACGATTACGAGGACGATTCATTCCAAGAGAGACCAGTGTATGCTCTCTC CGATTCCAACGTAATTGCTGAAGATGATGACGTGGATCCCAGTAGAAACTAA
AA sequence Show only first row Show all	>Lus10003111 pacid=23165942 polypeptide=Lus10003111 locus=Lus10003111.g ID=Lus10003111.BGIv1.0 annot-version=v1.0 MEIAFESSFLGRPVSVSGSKFSSLLRYSQVAKLPCKVSSKNYHYRARLSSKFVNPCCSGAAELNNWSVQRTRVFGSIIASSSLLGNHATGESVSGCNVTS DANWELIIVLLKRGVVLGALVCGILMFGYQRVLAAEGVSNPGYGVSGQNILLLKNSWPRLQQLLTVFKEQGLILAALLGLSAFFSMAETSITTLWPWKVR ELAEKDSEDGVFKLLRKDVTRFLTTILIGTTVVNIAATALVTEAATTIFGEAGVSAATGVMTVAILLLTEITPKSIAVHNATEVAKFVVRPVAWLSLVLY PVGRVVTYLSMGMLKILGVKLILAVSPLLCEPYVTEDELKLMLRGAELSGAIEEEEQDMIENVLEIKDTHVREVMTPLVDVFAIDAGATLIDFHELWVTH QYSRVPVFEQRVDNIVGIAYAMDLLDYVQKGELLESTVVGDMAHKPAYFVPDSMSVWNLLREFRIRKVHMAVVLNEYGGTVGLVTLEDVVEEIVGEIFDE NDSKEEIQKKTGYIVRRAEGVYDVDANISTDQLSEDLNIKMPEGHQYETVSGFICEAFGYIPRTGESIKVVLEKETEEDEDAQGISNREQHEKHMIYKLE VLAGNARKVSAVRFERIQNGDEAVAAKEVTRLLPKFRKRKRRSDKESDGDDDYEDDSFQERPVYALSDSNVIAEDDDVDPSRN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G55930			CBS domain-containing protein ...		Lus10003111 [exp]	0	1
AT1G55930			CBS domain-containing protein ...		Lus10004777 [exp]	2.4	0.9267
AT3G52140			tetratricopeptide repeat (TPR)...		Lus10015708 [exp]	2.8	0.9335
AT4G34910			P-loop containing nucleoside t...		Lus10015433 [exp]	3.0	0.9377
AT2G34780		EMB1611, MEE22	EMBRYO DEFECTIVE 1611, materna...		Lus10023360 [exp]	5.3	0.9177
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Lus10033331 [exp]	9.0	0.9073
AT4G15850		ATRH1	RNA helicase 1 (.1)		Lus10042818 [exp]	9.5	0.9048
AT5G01590			unknown protein		Lus10022672 [exp]	10.5	0.8917
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10009050 [exp]	12.0	0.8964
AT5G64420			DNA polymerase V family (.1)		Lus10037435 [exp]	12.0	0.9084
AT3G46740		MAR1, TOC75-III...	MODIFIER OF ARG1 1, translocon...		Lus10001566 [exp]	13.0	0.8917

Compare expression of checked genes

Lus10003111 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.