Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04240 305 / 3e-98 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11540 66 / 1e-12 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003113 [exp] 335 / 2e-109 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004779 [exp] 335 / 2e-109 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003576 [exp] 310 / 3e-100 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10017009 [exp] 65 / 4e-12 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10021336 [exp] 63 / 1e-11 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G051400 [exp] 315 / 3e-102 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G025600 [exp] 312 / 5e-101 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G208900 [exp] 71 / 2e-14 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G075700 [exp] 70 / 4e-14 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003112 pacid=23165939 polypeptide=Lus10003112 locus=Lus10003112.g ID=Lus10003112.BGIv1.0 annot-version=v1.0 ATGCGGCCTGCACCAATTCAGGTCTCATATATGGGATTTCCTGGAACTACTGGAGCAACATACATAGATTACTTGGTCACTGATGAGTTTGTTTCACCTT TGCAATATGCGCACATCTACTCTGAGAAGCTTGTTCATCTGCCTCACTGCTATTTCGTAAACGATTATAAACAGAAAAACCTGGATGTGTTGGATCCAAA TTGTCAGCACAAACGATCTGATTATGGGCTTCCAGAAGATAAATTTATATTTGCCTGCTTCAACCAGTTGTACAAAATGGATCCTGAAATCTTTAATACC TGGTACAGTTTGCCTCTTGGACTCTGTTCTGTTCCCTTCCAGTGCCTTGTTTTTTCCGGACCTAAAGCAAAGTTTATTCATTTCCAATTGCATAGGTGCA ATATTCTTAAACGAGTACCGAACAGTGCTCTTTGGCTACTTAGATTCCCCGCAGCAGGGGAAATGAGGCTTCGTGCATATGCCGCTGCTCAAGGAGTACA CCCGGACCAAATTATTTTTACCGATGTTGCGATGAAACAAGAGCATATCAGGCGTAGTGCACTGGCAGATCTCTGTTTGGACACGTAG
AA sequence Show only first row Show all	>Lus10003112 pacid=23165939 polypeptide=Lus10003112 locus=Lus10003112.g ID=Lus10003112.BGIv1.0 annot-version=v1.0 MRPAPIQVSYMGFPGTTGATYIDYLVTDEFVSPLQYAHIYSEKLVHLPHCYFVNDYKQKNLDVLDPNCQHKRSDYGLPEDKFIFACFNQLYKMDPEIFNT WYSLPLGLCSVPFQCLVFSGPKAKFIHFQLHRCNILKRVPNSALWLLRFPAAGEMRLRAYAAAQGVHPDQIIFTDVAMKQEHIRRSALADLCLDT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003112 [exp]	0	1
AT1G15060			Uncharacterised conserved prot...		Lus10000099 [exp]	1.0	0.8157
AT2G30690			Protein of unknown function, D...		Lus10014743 [exp]	7.7	0.7338
AT5G32440			Ubiquitin system component Cue...		Lus10027699 [exp]	11.2	0.6988
AT2G05250			DNAJ heat shock N-terminal dom...		Lus10001171 [exp]	11.6	0.7363
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003394 [exp]	12.4	0.7125
AT4G18490			unknown protein		Lus10034597 [exp]	13.3	0.7449
AT2G34400			Pentatricopeptide repeat (PPR-...		Lus10010320 [exp]	14.3	0.7212
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10035484 [exp]	17.7	0.6871
AT4G36210			Protein of unknown function (D...		Lus10041814 [exp]	20.0	0.6493
AT4G37460		SRFR1	SUPPRESSOR OF RPS4-RLD 1, Tetr...		Lus10014863 [exp]	25.8	0.7210

Compare expression of checked genes

Lus10003112 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.