Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G04240 1670 / 0 SEC secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G11540 288 / 6e-83 SPY SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G05150 85 / 2e-16 Calcium-binding tetratricopeptide family protein (.1) AT2G32450 82 / 1e-15 Calcium-binding tetratricopeptide family protein (.1) AT1G12270 65 / 2e-10 Hop1 Hop1, stress-inducible protein, putative (.1) AT1G27460 63 / 6e-10 NPGR1 no pollen germination related 1 (.1) AT4G37460 62 / 2e-09 SRFR1 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G12400 61 / 3e-09 Hop3 Hop3, stress-inducible protein, putative (.1.2) AT1G78120 59 / 1e-08 TPR12 tetratricopeptide repeat 12, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G06210 59 / 2e-08 VIP6, ELF8 VERNALIZATION INDEPENDENCE 6, EARLY FLOWERING 8, binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004779 [exp] 1977 / 0 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003576 [exp] 1758 / 0 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003112 [exp] 335 / 6e-109 AT3G04240 305 / 2e-98 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10021336 [exp] 282 / 6e-81 AT3G11540 1509 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10017009 [exp] 265 / 2e-73 AT3G11540 1356 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10033182 [exp] 85 / 2e-16 AT2G32450 1323 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10010627 [exp] 84 / 2e-16 AT2G32450 1148 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Lus10033033 [exp] 69 / 1e-11 AT5G63200 542 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1) Lus10042152 [exp] 64 / 4e-10 AT3G48150 904 / 0.0 anaphase-promoting complex subunit 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G051400 [exp] 1733 / 0 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G025600 [exp] 1720 / 0 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G208900 [exp] 297 / 4e-86 AT3G11540 1506 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G075700 [exp] 295 / 2e-85 AT3G11540 1505 / 0.0 SPINDLY, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.005G234900 [exp] 87 / 5e-17 AT1G05150 1239 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.002G027900 [exp] 81 / 4e-15 AT1G05150 1226 / 0.0 Calcium-binding tetratricopeptide family protein (.1) Potri.007G052200 [exp] 65 / 2e-10 AT4G37460 1333 / 0.0 SUPPRESSOR OF RPS4-RLD 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.012G092000 [exp] 64 / 4e-10 AT5G63200 759 / 0.0 tetratricopeptide repeat (TPR)-containing protein (.1) Potri.003G113400 [exp] 63 / 9e-10 AT4G12400 830 / 0.0 Hop3, stress-inducible protein, putative (.1.2) Potri.001G389300 [exp] 58 / 2e-08 AT1G78770 911 / 0.0 anaphase promoting complex 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10003113 pacid=23165946 polypeptide=Lus10003113 locus=Lus10003113.g ID=Lus10003113.BGIv1.0 annot-version=v1.0 ATGATCTCGTTGCAGAACGGAATTCGAGCTTCGGCTCGCGATGGAGCTGCTGCAGCAGCTGCAGCTGGCTTCCATGTCAAGCTGGAGCCGTCGACTCCTT CAGCTAGTCTGGTGCCTTTCAAGCCGAGGGACACCTCTCATCATGAAGTTGATGAAGACACACTTTTGGCGCTTGCCCATCAGATGTATAAGTCTGGAAG CTACAAACAGGCGCTAGAGCACAGCAATGTTGTGTATGAGAGAAATCCCCTTCGCACAGATAATCTGCTTCTTTTAGGGGCTATTTATTATCAGTTGCAT GATTATGATATGTGCATTGCGAAAAATGAAGAAGCACTCCGACTGGAGCCTCATTTTGCCGAGTGTTATGGAAACATGGCAAATGCCTGGAAGGAAAAAG GTGATATCGACCTGGCAGTTCGTTACTACTTGATCGCAATTGAGCTCCGCCCCAGTTTTGCTGATGCTTGGTCTAATTTGGCTAGTGCATACATGCGCAA AGGGAGACTCACTGAAGCAGCACAGTGCTGTCGGCAGGCGCTCGCTTTGAATCCTCTTTTGGTTGATGCCCATAGCAATCTGGGGAACTTAATGAAAGCA CAAGGCCTGGTGCAAGAAGCATACAGCTGTTACCTTGAAGCTCTGCGTATACAACCAACTTTTGCTATAGCATGGTCAAATCTTGCTGGTCTCTTCATGG AATCTGGTGACTTGCCTAGAGCTCTTCAGTACTATAAGGAAGCTGTAAAGCTTAAGCCCTCATTTCCTGATGCATACTTGAACCTTGGGAATGTGTACAA GGGTTTGGGTAGGCCTCAAGATGCTATTGCATGCTATCAGCGAGCTATTCAAAGTAGACCAAATTATGCTATAGCATATGGAAATTTGGCTAGCACGTAT TATGAGCGTGGGCAACTTGATCTGGCAATTCTTCATTATAAGCAAGCCATAAGTTTTGATCCCAGATTTTTGGAGGCATATAATAATTTGGGTAATGCAC TGAAAGATGTCGGCCATGTTGATGAAGCAATCCAATGCTATAGCCAATGTCTTACATTACAGCCTAGCCATCCACAAGCTCTAACAAACCTTGGGAATAT ATACATGGAATGGAACTTGCCAGCTGCAGCTGCTTCATACTATAAAGCAACTCTCGCTGTGACCACAGGACTGTCTGCTCCTTTCAACAATCTTGCTGTT ATCTACAAACAACAGGGAAATTATGCAGATGCTATATCTTGCTATAATGAGGTTCTTAGGATTGATCCCGCAGCAGCTGATGGTCTTGTGAACCGAGGCA ATACCTACAAAGAAATTGGTAGAGTAACTGAAGCTATACAAGATTACATCCGGGCCATTAATGTGCGACCTACTATGGCTGAAGCCCATGCAAACTTGGC CTCTGCCTACAAGGACAGTGGGCATGTCGAGGCTGCTGTGAAGAGCTATAGACAGGCATTGGTCCTTCGACCAGATTTTCCTGAGGCAACTTGTAACCTT CTGCACACACTGCAGTGTGTGTGTAGCTGGGAGGAGAGGGATAAAATGTTTAGTGAAGTCGAAGGGATTATCCGGAGACAGATCAATTCGTCTGTTCTTC CCAGTGTGCAACCTTTTCATGCTATAGCGTATCCTTTGGATCCGATACTTGCTCTAGAAATCAGCCGTAAATATGCTGCTCATTGCTCTATGATTGCTGC TCGTTTCTCACTTCCTCCCTTCAATCATCCTCCCCCAATTCCTGTTAAGTGTGACCATGGCAATGAGAGGCTTAGGGTTGGATATGTGAGCAGTGACTTT GGCAATCATCCTTTGTCACACCTCATGGGATCTGTATTTGGCATGCACAACCGGAGTAATATTGAGGTTTTCTGCTATGCTTTGAGTGCAAACGATGGCA CCGAGTGGCGGCAGCGTATCCAGACTGAAGCTGAGCACTTTGTAGATGTTTCTTCCATGACATCAGATATGATAGCGAAATTGATTAATGAAGATAAAAT ACAGATCCTAATCAACCTTAATGGTTACACCAAGGGTGCCAGAAATGAGATCTTTGCTATGCGGCCTGCACCAATTCAGGTCTCATATATGGGATTTCCT GGAACTACTGGAGCAACATACATAGATTACTTGGTCACTGATGAGTTTGTTTCACCTTTGCAATATGCGCACATCTACTCTGAGAAGCTTGTTCATCTGC CTCATTGCTATTTCGTAAACGATTATAAACAGAAAAACCTGGATGTGTTGGATCCAAATTGTCAGCACAAACGATCTGATTATGGGCTTCCAGAAGATAA ATTTATATTTGCCTGCTTCAACCAGTTGTACAAAATGGATCCTGAAATCTTTAATACCTGGTGCAATATTCTTAAACGAGTACCGAACAGTGCTCTTTGG CTACTTAGATTCCCCGCAGCAGGGGAAATGAGGCTTCGTGCATATGCCGCTGCTCAAGGAGTACACCCGGACCAAATTATTTTTACCGATGTTGCGATGA AACAAGAGCATATCAGGCGTAGTGCACTGGCAGATCTCTGTTTGGACACGCCATTATGCAATGCTCATACCACAGGAACGGATGTCTTATGGGCGGGTTT ACCAATGGTCACACTGCCCCTTGAGAAAATGGCGACAAGAGTTGCTGGCTCGCTGTGCCTTGCCACTGGACTTGGCGACGAAATGATCGTTAGCAGTATG AAAGAGTACGAAGATAAAGCAGTGTCGCTGGCCTTGAGTCGGCCAAAACTGCAGGCCCTAACCAATAAACTAGAGTCAGTCCGCCTGAGTTGTCCTCTGT TCGACACAGAACGTTGGGTGAAGAATCTGGACAGGGCTTATTTCAAGATGTGGAGTATTTACTGCGGTGGGAAGGAACCACATCATTTTAAGGTCACCGA GAATGATTTAGAATTCCCTTATGACCGGTCAACGTGA
AA sequence Show only first row Show all	>Lus10003113 pacid=23165946 polypeptide=Lus10003113 locus=Lus10003113.g ID=Lus10003113.BGIv1.0 annot-version=v1.0 MISLQNGIRASARDGAAAAAAAGFHVKLEPSTPSASLVPFKPRDTSHHEVDEDTLLALAHQMYKSGSYKQALEHSNVVYERNPLRTDNLLLLGAIYYQLH DYDMCIAKNEEALRLEPHFAECYGNMANAWKEKGDIDLAVRYYLIAIELRPSFADAWSNLASAYMRKGRLTEAAQCCRQALALNPLLVDAHSNLGNLMKA QGLVQEAYSCYLEALRIQPTFAIAWSNLAGLFMESGDLPRALQYYKEAVKLKPSFPDAYLNLGNVYKGLGRPQDAIACYQRAIQSRPNYAIAYGNLASTY YERGQLDLAILHYKQAISFDPRFLEAYNNLGNALKDVGHVDEAIQCYSQCLTLQPSHPQALTNLGNIYMEWNLPAAAASYYKATLAVTTGLSAPFNNLAV IYKQQGNYADAISCYNEVLRIDPAAADGLVNRGNTYKEIGRVTEAIQDYIRAINVRPTMAEAHANLASAYKDSGHVEAAVKSYRQALVLRPDFPEATCNL LHTLQCVCSWEERDKMFSEVEGIIRRQINSSVLPSVQPFHAIAYPLDPILALEISRKYAAHCSMIAARFSLPPFNHPPPIPVKCDHGNERLRVGYVSSDF GNHPLSHLMGSVFGMHNRSNIEVFCYALSANDGTEWRQRIQTEAEHFVDVSSMTSDMIAKLINEDKIQILINLNGYTKGARNEIFAMRPAPIQVSYMGFP GTTGATYIDYLVTDEFVSPLQYAHIYSEKLVHLPHCYFVNDYKQKNLDVLDPNCQHKRSDYGLPEDKFIFACFNQLYKMDPEIFNTWCNILKRVPNSALW LLRFPAAGEMRLRAYAAAQGVHPDQIIFTDVAMKQEHIRRSALADLCLDTPLCNAHTTGTDVLWAGLPMVTLPLEKMATRVAGSLCLATGLGDEMIVSSM KEYEDKAVSLALSRPKLQALTNKLESVRLSCPLFDTERWVKNLDRAYFKMWSIYCGGKEPHHFKVTENDLEFPYDRST

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10003113 [exp]	0	1
AT3G04240		SEC	secret agent, Tetratricopeptid...		Lus10004779 [exp]	1.0	0.9204
AT1G08720		EDR1, ATEDR1	ENHANCED DISEASE RESISTANCE 1,...		Lus10004124 [exp]	2.0	0.7759
AT1G08800			Protein of unknown function, D...		Lus10006566 [exp]	10.1	0.7105
AT2G28310			Protein of unknown function (D...		Lus10021463 [exp]	12.2	0.6161
AT3G49490			unknown protein		Lus10032925 [exp]	13.1	0.7340
AT1G59820		ALA3	aminophospholipid ATPase 3 (.1...		Lus10036682 [exp]	16.3	0.7347
AT3G49060			U-box domain-containing protei...		Lus10039245 [exp]	17.5	0.6997
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011860 [exp]	18.0	0.6776
AT3G09830			Protein kinase superfamily pro...		Lus10013811 [exp]	18.0	0.6961
AT4G12770			Chaperone DnaJ-domain superfam...		Lus10016079 [exp]	18.2	0.7163

Compare expression of checked genes

Lus10003113 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.