Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) AT5G39130 303 / 3e-105 RmlC-like cupins superfamily protein (.1) AT5G39180 301 / 1e-104 RmlC-like cupins superfamily protein (.1) AT5G39190 300 / 3e-104 ATGER2, GLP2A GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) AT5G39120 300 / 4e-104 RmlC-like cupins superfamily protein (.1) AT5G39160 299 / 9e-104 RmlC-like cupins superfamily protein (.1.2.3) AT5G39110 295 / 2e-102 RmlC-like cupins superfamily protein (.1) AT3G05950 279 / 9e-96 RmlC-like cupins superfamily protein (.1) AT5G38960 273 / 2e-93 RmlC-like cupins superfamily protein (.1) AT5G38940 273 / 2e-93 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006543 [exp] 451 / 8e-164 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10003116 [exp] 399 / 2e-143 AT5G39150 303 / 2e-105 RmlC-like cupins superfamily protein (.1) Lus10006536 [exp] 395 / 9e-142 AT5G39150 308 / 2e-107 RmlC-like cupins superfamily protein (.1) Lus10006538 [exp] 394 / 3e-141 AT5G39120 313 / 3e-109 RmlC-like cupins superfamily protein (.1) Lus10033767 [exp] 390 / 2e-139 AT5G39150 298 / 2e-103 RmlC-like cupins superfamily protein (.1) Lus10000622 [exp] 384 / 2e-137 AT5G39130 307 / 7e-107 RmlC-like cupins superfamily protein (.1) Lus10003267 [exp] 266 / 1e-90 AT5G39130 257 / 4e-87 RmlC-like cupins superfamily protein (.1) Lus10033764 [exp] 266 / 3e-89 AT5G39190 211 / 1e-67 GERMIN-LIKE PROTEIN 2A, A. THALIANA GERMIN LIKE PROTEIN 2, germin-like protein 2 (.1.2) Lus10032016 [exp] 259 / 4e-88 AT5G39160 264 / 3e-90 RmlC-like cupins superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G026200 [exp] 339 / 1e-119 AT3G05950 308 / 2e-107 RmlC-like cupins superfamily protein (.1) Potri.019G025800 [exp] 335 / 6e-118 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.019G025900 [exp] 335 / 6e-118 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026000 [exp] 335 / 6e-118 AT3G05950 288 / 3e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026400 [exp] 333 / 4e-117 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026500 [exp] 333 / 4e-117 AT3G05950 288 / 2e-99 RmlC-like cupins superfamily protein (.1) Potri.019G026700 [exp] 332 / 1e-116 AT3G05950 286 / 1e-98 RmlC-like cupins superfamily protein (.1) Potri.013G062950 [exp] 295 / 5e-102 AT5G39130 284 / 6e-98 RmlC-like cupins superfamily protein (.1) Potri.013G063100 [exp] 295 / 5e-102 AT5G39130 284 / 6e-98 RmlC-like cupins superfamily protein (.1) Potri.013G063001 [exp] 295 / 5e-102 AT5G39130 284 / 6e-98 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10003114 pacid=23165936 polypeptide=Lus10003114 locus=Lus10003114.g ID=Lus10003114.BGIv1.0 annot-version=v1.0 ATGAAAGGGTCTCAATTCATTGGAGCAGTCTTGGCACTGTCTTCATTAATGTGCTTCACCACTGCCTATGATCCAAGCCCTCTCCAGGACTTTTGCGTCG CCATTGATGATCCTAAATATGGAGTATTTGTGAACGGAAAGTTCTGCAAGGATCCCATGCAGGCTAACGCAGAGGACTTCTCCTTCAAAGGACTCAACGT CCCCAGAGACACATCCTCCAACAAAGTGGGTTCGAACGTCACTCTTTTGAACGTCGACCAGATTCCAGGGCTCAACACCTTAGGAATTTCATTGGCTCGT CTCGACTACGCTCCCAACGGAGGGCTCAACCCACCCCACACCCACCCTCGTGGCACCGAGATTCTGGTTGTTCAACAAGGTGTACTCTACGTTGGGTTTA TTACTTCCAACCCAGATAATCGCCTCATTAGCAAGGTGCTTTACCCCGGTGATGTGTTTGTTTTCCCAATTGGACTCATCCATTTCCAACTCAACATCGA CAAGGCTCCTGCAGTGGCCTTTGCCGGATTGAGCAGCCAGAACCCAGGAGTTATCACCATAGCTAACACAGTGTTCGGCGCAAACCCACCGGTCAACCCT GACGTGTTGACCAAGGCATTCATGCTGGACAAGAATATAGTGGCTGATCTACAGAAGAAGTTTGCCAAAAACTAA
AA sequence Show only first row Show all	>Lus10003114 pacid=23165936 polypeptide=Lus10003114 locus=Lus10003114.g ID=Lus10003114.BGIv1.0 annot-version=v1.0 MKGSQFIGAVLALSSLMCFTTAYDPSPLQDFCVAIDDPKYGVFVNGKFCKDPMQANAEDFSFKGLNVPRDTSSNKVGSNVTLLNVDQIPGLNTLGISLAR LDYAPNGGLNPPHTHPRGTEILVVQQGVLYVGFITSNPDNRLISKVLYPGDVFVFPIGLIHFQLNIDKAPAVAFAGLSSQNPGVITIANTVFGANPPVNP DVLTKAFMLDKNIVADLQKKFAKN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G39150			RmlC-like cupins superfamily p...		Lus10003114 [exp]	0	1
AT5G39150			RmlC-like cupins superfamily p...		Lus10006543 [exp]	1.0	0.9433
					Lus10006216 [exp]	2.0	0.8935
AT1G31260		ZIP10	zinc transporter 10 precursor ...		Lus10040615 [exp]	3.3	0.8806
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Lus10004780 [exp]	5.6	0.8573
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10015687 [exp]	7.3	0.8441
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Lus10020288 [exp]	7.9	0.9004
AT2G18660		AtPNP-A, PNP-A,...	plant natriuretic peptide A (....		Lus10030078 [exp]	8.8	0.8605
AT1G78100		AUF1	auxin up-regulated f-box prote...		Lus10041123 [exp]	9.3	0.8980
AT1G14220			Ribonuclease T2 family protein...		Lus10035882 [exp]	11.0	0.8503
AT2G02990		RNS1, ATRNS1	ribonuclease 1 (.1)		Lus10035881 [exp]	11.4	0.8484

Compare expression of checked genes

Lus10003114 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.