Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26300 661 / 0 ATGPA1, GPALPHA1, GPA1 ,GP ALPHA 1 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) AT1G31930 187 / 5e-52 XLG3 extra-large GTP-binding protein 3 (.1.2.3) AT2G23460 147 / 4e-38 ATXLG1, XLG1 extra-large G-protein 1 (.1) AT4G34390 120 / 3e-29 XLG2 extra-large GTP-binding protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004784 [exp] 813 / 0 AT2G26300 665 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Lus10010421 [exp] 168 / 4e-45 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10012124 [exp] 166 / 1e-44 AT1G31930 1154 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Lus10021012 [exp] 156 / 1e-41 AT2G23460 769 / 0.0 extra-large G-protein 1 (.1) Lus10023838 [exp] 156 / 3e-41 AT2G23460 836 / 0.0 extra-large G-protein 1 (.1) Lus10019655 [exp] 151 / 1e-39 AT2G23460 1149 / 0.0 extra-large G-protein 1 (.1) Lus10000743 [exp] 146 / 3e-38 AT2G23460 975 / 0.0 extra-large G-protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G219500 [exp] 679 / 0 AT2G26300 645 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Potri.018G048600 [exp] 650 / 0 AT2G26300 659 / 0.0 ARABIDOPSIS THALIANA G PROTEIN ALPHA SUBUNIT 1, G protein alpha subunit 1 (.1) Potri.001G135300 [exp] 194 / 2e-54 AT1G31930 1191 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.003G098200 [exp] 187 / 6e-52 AT1G31930 1123 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.012G042500 [exp] 167 / 3e-45 AT1G31930 967 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.015G031100 [exp] 157 / 8e-42 AT1G31930 961 / 0.0 extra-large GTP-binding protein 3 (.1.2.3) Potri.007G035200 [exp] 151 / 1e-39 AT2G23460 1146 / 0.0 extra-large G-protein 1 (.1) Potri.005G131200 [exp] 144 / 5e-37 AT2G23460 1083 / 0.0 extra-large G-protein 1 (.1) Potri.009G109400 [exp] 138 / 4e-35 AT2G23460 807 / 0.0 extra-large G-protein 1 (.1) Potri.004G148300 [exp] 131 / 8e-33 AT2G23460 773 / 0.0 extra-large G-protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00503 [flax] [poplar] G-alpha G-protein alpha subunit
Representative CDS sequence Show only first row Show all	>Lus10003115 pacid=23165945 polypeptide=Lus10003115 locus=Lus10003115.g ID=Lus10003115.BGIv1.0 annot-version=v1.0 ATGGGCCAGTTATGCAGTAGACAACGTCACTACAGTGAAGCAGAGAATGAAGAGACTGGACAGGCAGCAGAGATTGAAAGGCGGATAGAGCAAGAGACAA AGGCAGAAAAGCACATTCAGAAACTGCTGTTACTTGGTACTGGAGACTCAGGAAAGTCCACAATTTTTAAGCAGATAAAGCTTTTGTTTCAAAGTGGTTT CGATGAATCAGAGCTAAAGAACTACGTCTCAGTTGTACATGCCAATGTCTATCAGACTATAAAAATATTGCATGATGGTTCTAATGAATTGGCGCAAAAT GAAGAGTCGTCGTCCAAGTATATTATATCCGTGGAAAATAAGGCAATTGGAGAGAGATTATCAGAAATCGGAAGCCAGTTGAATTATCCACGGCTTACTA CGGAGATTGCACAGGACATAGAAACTCTTTGGAAAGATCCTGCCGTTCAGGAAACTTATTCCAGGGGTAATGAGCTTCAAGTTCCGGATTGCACACATTA CTTCATGGAAAATTTGCAAAGATTGTCTGATGCAAATTACTTGCCAACTAAGGAAGATGTTCTTCATGCAAGAGTTCGAACGACTGGTGTGGTTGAGATA CAATTCAGCCCTGTCGGAGAGAGCAAGAAAAGTGGTGAAGTATATAGACTTTTTGATGTTGGTGGTCAGAGAAACGAGAGGCGAAAGTGGATTCATCTCT TTGAAGGAGTTACGGCTGTGATATTTTGTGCTGCCATTAGTGAGTACGATCAAACACTCTTCGAAGATGAACATAAGAACCGTATGATGGATACAAAGGA GTTATTCGAGTGGGTTCTCAAGCAACCATGTTTCGAGGTTTTTTTCTCTTCTCTTGCACCCCAACTTATCTCCATCATACTTATTTTGTTACTAGAGACT AGCTCTCATGCACTGCTCAGAATCTCATGTGGATCCTTCACTTCTCTTTTGGAGCAGAAAACATCCTTCATGTTGTTTCTAAACAAGTTTGATCTTTTCG AGAAGAAGATTGCGAAAGTTCCACTCAATGCATGCGAGTGGTTCAAGGATTACCAGCCGGTGTCCTCGGGAAAACAAGAGGTGGAGCATGCATACGAGTT TGTGAAGAAGAAGTTTGAGGAGCTGTATTTCCAAAGCACAAGCCCGGATCGGGTGGACCGAGTGTTCAAAATCTATAGAACCACTGCACTTGATCAGAAG CTTGTGAAGAAGACATTCAAGTTGGTGGACGAGACATTGCGACGAAGGAATCTGTTTGAAGCCGGCTTGCTGTAA
AA sequence Show only first row Show all	>Lus10003115 pacid=23165945 polypeptide=Lus10003115 locus=Lus10003115.g ID=Lus10003115.BGIv1.0 annot-version=v1.0 MGQLCSRQRHYSEAENEETGQAAEIERRIEQETKAEKHIQKLLLLGTGDSGKSTIFKQIKLLFQSGFDESELKNYVSVVHANVYQTIKILHDGSNELAQN EESSSKYIISVENKAIGERLSEIGSQLNYPRLTTEIAQDIETLWKDPAVQETYSRGNELQVPDCTHYFMENLQRLSDANYLPTKEDVLHARVRTTGVVEI QFSPVGESKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEHKNRMMDTKELFEWVLKQPCFEVFFSSLAPQLISIILILLLET SSHALLRISCGSFTSLLEQKTSFMLFLNKFDLFEKKIAKVPLNACEWFKDYQPVSSGKQEVEHAYEFVKKKFEELYFQSTSPDRVDRVFKIYRTTALDQK LVKKTFKLVDETLRRRNLFEAGLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Lus10003115 [exp]	0	1
AT2G26300		ATGPA1, GPALPHA...	ARABIDOPSIS THALIANA G PROTEIN...		Lus10004784 [exp]	1.0	0.9518
AT4G28830			S-adenosyl-L-methionine-depend...		Lus10043228 [exp]	4.0	0.9092
AT2G26590		RPN13	regulatory particle non-ATPase...		Lus10021598 [exp]	5.5	0.8906
AT3G54010		DEI1, PAS1	PASTICCINO 1, FKBP-type peptid...		Lus10022603 [exp]	9.5	0.8835
AT4G09510		A/N-InvI, CINV2	alkaline/neutral invertase I, ...		Lus10014824 [exp]	10.2	0.8641
AT5G47790	FHA		SMAD/FHA domain-containing pro...		Lus10003911 [exp]	10.7	0.8869
AT5G25220	HD	KNAT3	KNOTTED1-like homeobox gene 3 ...		Lus10003183 [exp]	15.1	0.8905
AT5G37480			unknown protein		Lus10013637 [exp]	15.3	0.8879
AT1G31120		KUP10	K+ uptake permease 10, K+ upta...		Lus10038362 [exp]	18.7	0.8780
AT4G32175			PNAS-3 related (.1)		Lus10042121 [exp]	23.7	0.8647

Compare expression of checked genes

Lus10003115 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.