Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27340 165 / 6e-50 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G30950 54 / 4e-09 UFO UNUSUAL FLORAL ORGANS, F-box family protein (.1) AT4G33160 49 / 2e-07 F-box family protein (.1) AT5G15710 40 / 0.0003 Galactose oxidase/kelch repeat superfamily protein (.1) AT5G43190 39 / 0.0004 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015775 [exp] 187 / 1e-58 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037030 [exp] 187 / 2e-58 AT1G27340 615 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10011354 [exp] 161 / 3e-50 AT1G27340 187 / 2e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10018690 [exp] 49 / 3e-07 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10007755 [exp] 45 / 3e-06 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10035147 [exp] 39 / 0.0005 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031955 [exp] 39 / 0.001 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G057100 [exp] 167 / 1e-50 AT1G27340 613 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G171300 [exp] 165 / 6e-50 AT1G27340 628 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.006G217500 [exp] 65 / 4e-13 AT4G33160 419 / 9e-145 F-box family protein (.1) Potri.003G074100 [exp] 44 / 1e-05 AT1G30950 528 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.004G112400 [exp] 42 / 3e-05 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G102300 [exp] 41 / 8e-05 AT5G15710 744 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G160900 [exp] 39 / 0.0005 AT1G30950 554 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003117 pacid=23169993 polypeptide=Lus10003117 locus=Lus10003117.g ID=Lus10003117.BGIv1.0 annot-version=v1.0 ATGGGGACATGGAAGCAACTCGCAATCCCAGCTCCGCGCCTTCTGTGTGAGTGTGTGCTTGCCGAATGCAAGGGGCGGATCATGCTCGTGGGACTCCTGA CACAAAAGGCAGCAACGTCTGTTATCGTATGGGAGCTGCAGAGATCGACGCTGTTGTGGAAGGAGGTGGACAGAATGCCGAACGCATGGTGCTTGGAGTT CTACGGTAAGAGATTTCGAATTACTTGCTTGGGCAACAAAGATATGGTCATGCTCTCTTTGAGCGTAGGTGATATAAACCGGTTAGTGATGTACGATATG GCGAATCGAGAATGGAGCAAGGTTCCTCGATATTCGGTGCCTTGCGGTAGATCGAGACAGTGGAACGTTTCTGGCGCGCCATTTCACCCTTCCCCTACTT CTATGGCCTGA
AA sequence Show only first row Show all	>Lus10003117 pacid=23169993 polypeptide=Lus10003117 locus=Lus10003117.g ID=Lus10003117.BGIv1.0 annot-version=v1.0 MGTWKQLAIPAPRLLCECVLAECKGRIMLVGLLTQKAATSVIVWELQRSTLLWKEVDRMPNAWCLEFYGKRFRITCLGNKDMVMLSLSVGDINRLVMYDM ANREWSKVPRYSVPCGRSRQWNVSGAPFHPSPTSMA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27340			Galactose oxidase/kelch repeat...		Lus10003117 [exp]	0	1
AT1G59950			NAD(P)-linked oxidoreductase s...		Lus10039266 [exp]	1.0	0.9226
AT5G61280			Remorin family protein (.1)		Lus10034714 [exp]	2.4	0.8686
AT1G03910			unknown protein		Lus10030000 [exp]	2.4	0.8471
AT1G65910	NAC	ANAC028	NAC domain containing protein ...		Lus10010959 [exp]	4.5	0.8603
					Lus10024086 [exp]	5.1	0.8311
					Lus10000538 [exp]	6.7	0.8289
AT5G49810		MMT	methionine S-methyltransferase...		Lus10038132 [exp]	7.2	0.8092
AT1G19670		CORI1, ATHCOR1,...	CORONATINE-INDUCED PROTEIN 1, ...		Lus10014702 [exp]	10.6	0.8444
AT1G08070		EMB3102, OTP82	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10030053 [exp]	10.7	0.8685
AT1G27180			disease resistance protein (TI...		Lus10008519 [exp]	11.0	0.8174

Compare expression of checked genes

Lus10003117 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.