Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27340 94 / 3e-23 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G61590 52 / 2e-08 HWS, HS HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT5G15710 48 / 3e-07 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G16820 44 / 1e-05 F-box and associated interaction domains-containing protein (.1) AT5G49610 42 / 3e-05 F-box family protein (.1) AT3G17710 41 / 7e-05 F-box and associated interaction domains-containing protein (.1) AT3G16740 41 / 8e-05 F-box and associated interaction domains-containing protein (.1) AT3G17320 41 / 8e-05 F-box and associated interaction domains-containing protein (.1) AT5G36820 41 / 0.0001 F-box and associated interaction domains-containing protein (.1) AT5G36730 41 / 0.0001 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015775 [exp] 115 / 3e-31 AT1G27340 598 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10037030 [exp] 114 / 1e-30 AT1G27340 615 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10035147 [exp] 50 / 9e-08 AT5G15710 721 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10031955 [exp] 49 / 1e-07 AT5G15710 719 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Lus10018690 [exp] 44 / 1e-05 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10007755 [exp] 44 / 1e-05 AT1G30950 514 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Lus10006734 [exp] 39 / 0.0001 AT1G30920 54 / 4e-10 F-box family protein (.1) Lus10013872 [exp] 39 / 0.0006 AT3G06240 101 / 2e-23 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G057100 [exp] 102 / 3e-26 AT1G27340 613 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.003G171300 [exp] 102 / 3e-26 AT1G27340 628 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.004G112400 [exp] 48 / 3e-07 AT5G15710 753 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.017G102300 [exp] 46 / 1e-06 AT5G15710 744 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.001G160900 [exp] 44 / 7e-06 AT1G30950 554 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.003G074100 [exp] 43 / 2e-05 AT1G30950 528 / 0.0 UNUSUAL FLORAL ORGANS, F-box family protein (.1) Potri.002G166500 [exp] 41 / 9e-05 AT3G61590 542 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.014G093200 [exp] 40 / 0.0002 AT3G61590 538 / 0.0 HAWAIIAN SKIRT, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.002G007700 [exp] 39 / 0.0004 AT5G42350 718 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.010G149000 [exp] 39 / 0.0005 AT5G49610 528 / 0.0 F-box family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10003118 pacid=23170003 polypeptide=Lus10003118 locus=Lus10003118.g ID=Lus10003118.BGIv1.0 annot-version=v1.0 ATGGCTGAGAAATCGGAAAGCAAACCTTACGACGAGGCTCCACCCATAGTAGAGAAATGTCGGATGCAGCGCAGTAATCAACTGAAATGCGAGGTCATGG AATCCGAAATCTGGAAGGACTCTCCAAAAGATCTGTTCGAAGCTGTCAACGCAAGGCTACCCGTTGCCGCTCTCTTCAGGTTCCGAACCGTCTGCCGGAA ATGGAATTCCTTGCCGAGCTCAGATAGTTTTGCCCAAGCTCGAGGAGGAGGCATGATCAGTCTTTGGTTCTACACCGTCACTGACGAGGACACGAATTCG GGAGCCATGTACGACCCTTCCTTGAAGAAATGGTACCCTCCTCCTCCGAAACTATCTCTGTCTCTGCCTCTCGAGACGATTGTCTTGCCGGTTGCTTCAG CAGGAATCTAG
AA sequence Show only first row Show all	>Lus10003118 pacid=23170003 polypeptide=Lus10003118 locus=Lus10003118.g ID=Lus10003118.BGIv1.0 annot-version=v1.0 MAEKSESKPYDEAPPIVEKCRMQRSNQLKCEVMESEIWKDSPKDLFEAVNARLPVAALFRFRTVCRKWNSLPSSDSFAQARGGGMISLWFYTVTDEDTNS GAMYDPSLKKWYPPPPKLSLSLPLETIVLPVASAGI

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27340			Galactose oxidase/kelch repeat...		Lus10003118 [exp]	0	1
AT1G27170			transmembrane receptors;ATP bi...		Lus10020537 [exp]	4.8	0.7081
					Lus10009807 [exp]	10.7	0.6642
AT5G07630			lipid transporters (.1)		Lus10027222 [exp]	12.0	0.6141
					Lus10035698 [exp]	23.3	0.6289
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10037732 [exp]	24.5	0.6907
AT3G06080		TBL10	TRICHOME BIREFRINGENCE-LIKE 10...		Lus10034039 [exp]	27.7	0.5960
AT1G17665			unknown protein		Lus10006153 [exp]	33.4	0.6361
AT5G15940			NAD(P)-binding Rossmann-fold s...		Lus10016771 [exp]	35.1	0.6636
					Lus10008159 [exp]	35.5	0.5940
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10036519 [exp]	36.9	0.6414

Compare expression of checked genes

Lus10003118 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.