Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67310 600 / 0 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) AT4G16150 352 / 8e-107 CAMTA calmodulin binding;transcription regulators (.1) AT2G22300 343 / 1e-102 CAMTA SR1, CAMTA3 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) AT5G64220 316 / 9e-93 CAMTA Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) AT5G09410 312 / 1e-91 CAMTA CAMTA1, EICBP.B calmodulin-binding transcription activator 1, ethylene induced calmodulin binding protein (.1.2.3) AT3G16940 247 / 1e-69 CAMTA calmodulin binding;transcription regulators (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011352 [exp] 1687 / 0 AT1G67310 637 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Lus10003405 [exp] 339 / 9e-101 AT5G64220 1028 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10036162 [exp] 334 / 4e-97 AT5G64220 818 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Lus10041704 [exp] 315 / 4e-93 AT2G22300 912 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10024044 [exp] 307 / 5e-90 AT2G22300 822 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Lus10016873 [exp] 274 / 2e-78 AT3G16940 929 / 0.0 calmodulin binding;transcription regulators (.1) Lus10037738 [exp] 266 / 1e-75 AT4G16150 1033 / 0.0 calmodulin binding;transcription regulators (.1) Lus10036455 [exp] 259 / 6e-73 AT4G16150 845 / 0.0 calmodulin binding;transcription regulators (.1) Lus10041126 [exp] 150 / 5e-37 AT4G16150 430 / 1e-137 calmodulin binding;transcription regulators (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G057800 [exp] 701 / 0 AT1G67310 832 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.003G170600 [exp] 681 / 0 AT1G67310 856 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1) Potri.005G075100 [exp] 368 / 2e-111 AT2G22300 976 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.007G093400 [exp] 344 / 1e-102 AT2G22300 991 / 0.0 CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR 3, signal responsive 1 (.1.2) Potri.010G153100 [exp] 336 / 1e-100 AT5G64220 676 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.010G141700 [exp] 279 / 3e-80 AT4G16150 1038 / 0.0 calmodulin binding;transcription regulators (.1) Potri.008G107900 [exp] 279 / 3e-80 AT4G16150 1026 / 0.0 calmodulin binding;transcription regulators (.1) Potri.008G099733 [exp] 88 / 5e-21 AT5G64220 97 / 1e-25 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1.2) Potri.004G210100 [exp] 50 / 6e-06 AT2G17390 430 / 3e-151 ankyrin repeat-containing 2B (.1) Potri.004G210000 [exp] 50 / 7e-06 AT2G17390 418 / 1e-146 ankyrin repeat-containing 2B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif CL0159 [flax] [poplar] E-set PF01833 [flax] [poplar] TIG IPT/TIG domain CL0159 [flax] [poplar] PF03859 [flax] [poplar] CG-1 CG-1 domain
Representative CDS sequence Show only first row Show all	>Lus10003119 pacid=23170012 polypeptide=Lus10003119 locus=Lus10003119.g ID=Lus10003119.BGIv1.0 annot-version=v1.0 ATGTTGCAGCCAGACCCTGGCCAAGGATATGACATCAATCGATTACTCCAAGAAGCTCAGCATCGTTGGCTGAAGCCAGTGGAGGTGTTCTTTATACTCC AAAATCATGACAAGTACAAGTTTACAGAGAAGACACCTATAAGGCCATCTGCTGGATCGCTGTTTCTTTACAACAAGAGGGTAACAAGATTTTTCCGTAA GGACGATCATAATTGGCGGAAGAAAAAAGATGGGAGGACTGTTGCTGAAGCACATGAAAAACTTAAGGTTGGAAATGTTGAAAGGTTGAACTGCTATTAT GCACACGGGGAAGAGATCCCACATTTTCAACGACGCAGCTATTGGATGCTAGAACCGCCGTATGACCACGTTGTTCTTGTTCATTATAGAGATATCAACG AGGGAATAACACCTTCTGGATCTCTTGTACAGTCCACTCCAGGGGCCTCCTCCCATATCGGTCCGAGTCCAAGTTATAATACTACCCACAATCAAGGATC TACTCCGCCAATTAGTAATTCGTATGAACCGTATACAAATTCGTCCAGTCCTGGTTCAACTGAAGTTACTTCAGAGATACTCATAAAGGGAAATGAGGGG TTTAGTGCTACTAAGTTTGCCGCTGAAAAGAACGATGTCAATCAATATCTTCGAAGCCTAAAGAAAAATCTAAGCTTGGATGACGATATGGTCACAGGAC TCGATCTATTCGATGAAGGACCTTTGAATCAACCAGGATTCTTGGGGTATGATGACGCCTTTGAACAGGAAAAGATGACATCTGCATTGAAGAGCGAGCC TGTTGAGGAATTTCAAAATTCGCAGTGGCTAAACTTCGGTCAAGTCAATTACGGAGCAGCTGCTGCTGTTTCGGGCTCTGGAGTTGGGAAATCCGAAGTT CGAGATGTCAATCCGGACAGCTACGGAATGCCATTCAGCCATGGTCAAGCCGACTCCCGGTTGGCCATTGCACAACACAATAAATTTACGATCCGGAAAA TATCTCCAGAGTGGGGTTATTGCAACGAGGTTACCAAGGTATTGATAGTCGGATTTTTCCTCTGTGATCCGTCCGGATCTGCATGGACATGCATGTTTGG CGACAAAGAAGTCCCTCTGGAGATCATTCAGGAAGGTGTTTTACAGTGTGCCACCCCTCTGGAGATGCCTCCAGGGAAGGTATCAATTTGTATAACTTCT GGTAATCGACAACCTTGCAGTGAAATAGGGCAGTTCGAATTTCGGAACAAATCTAGTGGTGACATTGTACACCAGTTGCTCGAAAGGAGTGCAGAGGAAA TGCTGTCACTTGTCAGATTGGTTGAGATGCTCCTCTCCGGTTCCTCTCTTCCGAAACTCAACGATGAAGAGTCCGGACTTGATCAACCGGAGATCTTAAA GTTAAAATCAGATGAGGACTCGTGGGTTCAGGTAATCGAGGCTCTGTTAGTTGGAAACGGAACGTCATCAGATACTGTTTATTGGCTTCTTGAACAGCTT CTTAAAGACAAGCTGCACCGATGGCTTTCGTCCAAGTACAATCGGTTTGATTATCAAGATGGTTGCTTGCTGTCCAAGAAAGAGCAAGGGATAATACACA TGGTTGCTGGACTCGGTTTCGAATGGGCGTTGATCCCCATACTCAATCATGGTGTCAGTGTTGACTTCCGCGACATTAATGGGTGGACAGCTCTTCATTG GGCTTCACGCTTCGGGAGGGAGAAAATGGTTGCAGCACTTATTGCTTCTGGAGCTTCACCAGGAGCCGTCACGGATCCCAATTCACAAGATCCGGCTGGG AAAACCCCAGCTTCAATCGCTGCCATCAATGGACATCACGGGCTAGCCGGTTATCTTTCCGAGCTCGCGCTGACCACCCATCTCTCGTCTCTTACATTAG AAGAGAGCGAGCTATCCAAAGGATCTGCGGAGGTCGAAGCTGAGAGAACCGTCGTCGACAGCATCTCGAATGCGGTCTTCCCTGCATCATTCGAAGATCA GGTCTCGATTAACACCACACTCGCTGCCGTCAGGAATTCAGCTCAGGCAGCTGCCAGGATACAGTCGGCTTTCCGTGCACATTCTTTCAGAAAGCGGCAG CAAAGGGAGGCTGCCGTTAGAGACGAGTATGGGATCCGATCCCGTGAGATTCAGGAGCTTTCAGCTCTCTCGAAAATGACCTTCGGTAATGCTCGCGACT ACAGCACTGCTGCTCTATCGATCCAGAAGAAATATCGCGGATGGAAAAATCGACAGGATTTCCTTACTTTGAAGAAGAAAGTTGTCAAGATTCAGGCTCA TGTGAGAGGCTACCAGGTGAGAAAGCATTACCGGGTTATTTGCTGGGCTGTCGGGATCATAGACAAGGTCGTGTTACGATGGAGACGAAAAGGCGCCGGT CTGCGAAACTTCCGGAACAAGGCTGAGCAGCCCATTGTCGAGGACGAGGAATCAGACGAAGACATCCTCAAGGTGTTCCGTAAGCAGAAGGTGGACGGAG CCATTGACGAAGCAGTTTCTCGCGTTCTGTCGATGGTTCATTCTCCAGACGCTCGCGATCAGTACCAGAGGATGCTAGAACGGTACAAGCAAGCTAAGGC GGAACTAGCTACGACGAGCGAAGCTGGAACCTTGGATCAACCCGACAACACCAATAATGAGTTCGGAATGGACGACGACGACCTTCAGCAATATTTCCAG TAG
AA sequence Show only first row Show all	>Lus10003119 pacid=23170012 polypeptide=Lus10003119 locus=Lus10003119.g ID=Lus10003119.BGIv1.0 annot-version=v1.0 MLQPDPGQGYDINRLLQEAQHRWLKPVEVFFILQNHDKYKFTEKTPIRPSAGSLFLYNKRVTRFFRKDDHNWRKKKDGRTVAEAHEKLKVGNVERLNCYY AHGEEIPHFQRRSYWMLEPPYDHVVLVHYRDINEGITPSGSLVQSTPGASSHIGPSPSYNTTHNQGSTPPISNSYEPYTNSSSPGSTEVTSEILIKGNEG FSATKFAAEKNDVNQYLRSLKKNLSLDDDMVTGLDLFDEGPLNQPGFLGYDDAFEQEKMTSALKSEPVEEFQNSQWLNFGQVNYGAAAAVSGSGVGKSEV RDVNPDSYGMPFSHGQADSRLAIAQHNKFTIRKISPEWGYCNEVTKVLIVGFFLCDPSGSAWTCMFGDKEVPLEIIQEGVLQCATPLEMPPGKVSICITS GNRQPCSEIGQFEFRNKSSGDIVHQLLERSAEEMLSLVRLVEMLLSGSSLPKLNDEESGLDQPEILKLKSDEDSWVQVIEALLVGNGTSSDTVYWLLEQL LKDKLHRWLSSKYNRFDYQDGCLLSKKEQGIIHMVAGLGFEWALIPILNHGVSVDFRDINGWTALHWASRFGREKMVAALIASGASPGAVTDPNSQDPAG KTPASIAAINGHHGLAGYLSELALTTHLSSLTLEESELSKGSAEVEAERTVVDSISNAVFPASFEDQVSINTTLAAVRNSAQAAARIQSAFRAHSFRKRQ QREAAVRDEYGIRSREIQELSALSKMTFGNARDYSTAALSIQKKYRGWKNRQDFLTLKKKVVKIQAHVRGYQVRKHYRVICWAVGIIDKVVLRWRRKGAG LRNFRNKAEQPIVEDEESDEDILKVFRKQKVDGAIDEAVSRVLSMVHSPDARDQYQRMLERYKQAKAELATTSEAGTLDQPDNTNNEFGMDDDDLQQYFQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10003119 [exp]	0	1
AT1G61820		BGLU46	beta glucosidase 46 (.1.3)		Lus10007656 [exp]	3.0	0.9045
AT4G19860			alpha/beta-Hydrolases superfam...		Lus10017142 [exp]	6.2	0.9088
AT1G05840			Eukaryotic aspartyl protease f...		Lus10021485 [exp]	9.6	0.9172
AT1G48790		AMSH1	associated molecule with the S...		Lus10009634 [exp]	9.8	0.9041
AT3G55960			Haloacid dehalogenase-like hyd...		Lus10009890 [exp]	10.2	0.8836
AT5G05140			Transcription elongation facto...		Lus10027295 [exp]	12.5	0.9016
AT1G27840		ATCSA-1	Transducin/WD40 repeat-like su...		Lus10007742 [exp]	15.9	0.8686
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Lus10024097 [exp]	16.5	0.8984
AT1G34320			Protein of unknown function (D...		Lus10017136 [exp]	19.4	0.8884
AT2G01275			RING/FYVE/PHD zinc finger supe...		Lus10034640 [exp]	20.1	0.8890

Compare expression of checked genes

Lus10003119 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.