Plant FIBer expression Database

Lus10003121 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G27290 146 / 3e-45 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011352
[exp]
213 / 2e-64 AT1G67310 637 / 0.0 Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains (.1)
Lus10037037
[exp]
152 / 2e-47 AT1G27290 144 / 1e-44 unknown protein
Lus10015767
[exp]
148 / 8e-46 AT1G27290 146 / 7e-46 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G058100
[exp]
161 / 2e-51 AT1G27290 131 / 6e-40 unknown protein
Potri.003G170300
[exp]
159 / 1e-50 AT1G27290 129 / 2e-39 unknown protein
PFAM info
Representative CDS sequence
>Lus10003121 pacid=23170015 polypeptide=Lus10003121 locus=Lus10003121.g ID=Lus10003121.BGIv1.0 annot-version=v1.0
ATGATGAGGCAGCAACAGTCGGATCAGCACTCGCGTGCATTCCACGAGCTGACGAATATGGTTTTCAGCTTGCTCCGTTCGCCTCCGACGCCGATCCCGT
TCTCCGACCACTTCCCGGCGACAGTTTCTTCTTCTCCTCCTAGGTCGTTGCGGTCGGCGCAGATCACGCCGGCGGGGTTCGCTTCGCTGCTGCTAGGCGT
GTCACTGGCGATGATGCTGTGTGGATCCGTTACGTTCTTCATCGGATTCATCTTGATGCCCTGGGTGCTTGGATTAGTGATGGTGTTCTACGTCGCCGGT
ATCGTGTCCATGATCGCGATGTTAGGCCGTTGGATTCTCTGTTTCGCTGCTGGCCCTCCGCCTCCTCCCCGGAAGGACATTCCTGGTGTGGGGAAGTTTG
GATCGCTGGTTTTGAGAGCTGAGCAAGTGAACAACAGATTACCCTCCGGAGCCGGAGCCAAGAACCACACCGGGGAAACGCCAGATCTGAGTACCAAACC
GAACATGCAAACAGAACAATCACCTAAAAATGGGAAATGA
AA sequence
>Lus10003121 pacid=23170015 polypeptide=Lus10003121 locus=Lus10003121.g ID=Lus10003121.BGIv1.0 annot-version=v1.0
MMRQQQSDQHSRAFHELTNMVFSLLRSPPTPIPFSDHFPATVSSSPPRSLRSAQITPAGFASLLLGVSLAMMLCGSVTFFIGFILMPWVLGLVMVFYVAG
IVSMIAMLGRWILCFAAGPPPPPRKDIPGVGKFGSLVLRAEQVNNRLPSGAGAKNHTGETPDLSTKPNMQTEQSPKNGK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G27290 unknown protein Lus10003121
[exp]
0 1
AT1G75220 AtERDL6 ERD6-like 6, Major facilitator... Lus10041748
[exp]
1.4 0.9668
AT2G30600 BTB/POZ domain-containing prot... Lus10012262
[exp]
2.0 0.9435
AT1G75220 AtERDL6 ERD6-like 6, Major facilitator... Lus10028303
[exp]
3.0 0.9547
AT5G59960 unknown protein Lus10004947
[exp]
3.5 0.9393
AT3G06850 DIN3, LTA1, BCE... DARK INDUCIBLE 3, 2-oxoacid de... Lus10037492
[exp]
4.0 0.9564
AT2G17880 Chaperone DnaJ-domain superfam... Lus10028453
[exp]
6.2 0.9282
AT2G06005 FIP1 FRIGIDA interacting protein 1 ... Lus10017167
[exp]
8.4 0.9342
AT5G27830 unknown protein Lus10029881
[exp]
8.4 0.9405
AT5G18650 CHY-type/CTCHY-type/RING-type ... Lus10012811
[exp]
8.5 0.9295
AT3G56680 Single-stranded nucleic acid b... Lus10027292
[exp]
8.8 0.9382

Lus10003121 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.