Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65070 64 / 6e-13 MADS FCL4, MAF4, AGL69 MADS AFFECTING FLOWERING 4, AGAMOUS-like 69, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G65060 52 / 3e-08 MADS FCL3, MAF3, AGL70 MADS AFFECTING FLOWERING 3, AGAMOUS-like 70, K-box region and MADS-box transcription factor family protein (.1.2) AT5G65050 50 / 7e-08 MADS MAF2, AGL31 MADS AFFECTING FLOWERING 2, AGAMOUS-like 31 (.1.2.3) AT4G22950 49 / 2e-07 MADS AGL19 AGAMOUS-like 19 (.1) AT1G77080 44 / 1e-05 MADS FLM, AGL27, MAF1 MADS AFFECTING FLOWERING 1, FLOWERING LOCUS M, AGAMOUS-like 27, K-box region and MADS-box transcription factor family protein (.2.3.4.5) AT3G57230 43 / 5e-05 MADS AGL16 AGAMOUS-like 16 (.1.2) AT1G26310 42 / 8e-05 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT4G37940 39 / 0.0008 MADS AGL21 AGAMOUS-like 21 (.1) AT4G09960 39 / 0.001 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037038 [exp] 105 / 7e-29 AT5G65060 52 / 1e-08 MADS AFFECTING FLOWERING 3, AGAMOUS-like 70, K-box region and MADS-box transcription factor family protein (.1.2) Lus10011351 [exp] 84 / 2e-21 ND / Lus10015017 [exp] 40 / 0.0003 AT2G45650 174 / 1e-54 AGAMOUS-like 6 (.1) Lus10006715 [exp] 40 / 0.0003 AT4G22950 223 / 1e-73 AGAMOUS-like 19 (.1) Lus10039580 [exp] 40 / 0.0004 AT5G13790 246 / 2e-81 AGAMOUS-like 15 (.1) Lus10014143 [exp] 40 / 0.0004 AT4G22950 212 / 6e-69 AGAMOUS-like 19 (.1) Lus10005325 [exp] 40 / 0.0005 AT5G13790 249 / 7e-83 AGAMOUS-like 15 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G170200 [exp] 57 / 3e-10 AT5G65050 134 / 8e-40 MADS AFFECTING FLOWERING 2, AGAMOUS-like 31 (.1.2.3) Potri.001G058200 [exp] 57 / 4e-10 AT2G03710 156 / 3e-48 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.003G170000 [exp] 55 / 1e-09 AT5G65070 136 / 2e-40 MADS AFFECTING FLOWERING 4, AGAMOUS-like 69, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.003G169850 [exp] 52 / 3e-08 AT2G45650 143 / 5e-42 AGAMOUS-like 6 (.1) Potri.003G169700 [exp] 50 / 8e-08 AT5G65070 137 / 1e-40 MADS AFFECTING FLOWERING 4, AGAMOUS-like 69, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.003G119700 [exp] 48 / 5e-07 AT4G11880 226 / 4e-75 AGAMOUS-like 14 (.1) Potri.001G112400 [exp] 48 / 8e-07 AT4G22950 253 / 6e-86 AGAMOUS-like 19 (.1) Potri.012G132600 [exp] 42 / 7e-05 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1) Potri.013G104900 [exp] 42 / 0.0001 AT4G09960 330 / 3e-116 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Potri.019G077200 [exp] 41 / 0.0002 AT4G09960 274 / 5e-94 SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region
Representative CDS sequence Show only first row Show all	>Lus10003122 pacid=23170000 polypeptide=Lus10003122 locus=Lus10003122.g ID=Lus10003122.BGIv1.0 annot-version=v1.0 ATGTCCTCTCTGATGATCCGGTTTCATTTCCCTCTAACTGTAGTGTCGGCCAAACTAGAACCACTTGGGGTTGTTTTTGCTCTTGAGTTTACAGGCCGTC TGAATAGCTTCTCGAAGATCGTAAGTCGGTACAAGAGTCTCACAGAAGAAGCTGCTGATCCTAATGATACAGATAGTGCCAATAATGAGTTTACAGGAAT CTCTCCCACTGGACTGTTTGAAATCATTCAAAGGTATGTCATTGATGATGCAGCCGAAGAACAGCTGTCTGTGAATAACCTTGTACAGTTAGAAAACCAA GTCGGATTGGCACTATCACGAATCAAAGAAAGAAAGGTGCAACTGATGTTGGAACCCTTACAAACACTGCAAGAACAGGAGAACAAGCTAAGGCAGGAAA ATGAGCAGTTGAAAGAACAGATAGCCGCAGCCTCAGCCGCGGCGAAGAATGATAGCAACAGTGTCTTAGGCACCATCAAAGGCACGGATCATCGAAGTAG CTTGGTACAGCCGCCCACTCTACAATTACTCCAGTTGATGTAA
AA sequence Show only first row Show all	>Lus10003122 pacid=23170000 polypeptide=Lus10003122 locus=Lus10003122.g ID=Lus10003122.BGIv1.0 annot-version=v1.0 MSSLMIRFHFPLTVVSAKLEPLGVVFALEFTGRLNSFSKIVSRYKSLTEEAADPNDTDSANNEFTGISPTGLFEIIQRYVIDDAAEEQLSVNNLVQLENQ VGLALSRIKERKVQLMLEPLQTLQEQENKLRQENEQLKEQIAAASAAAKNDSNSVLGTIKGTDHRSSLVQPPTLQLLQLM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G65070	MADS	FCL4, MAF4, AGL...	MADS AFFECTING FLOWERING 4, AG...		Lus10003122 [exp]	0	1
AT3G15650			alpha/beta-Hydrolases superfam...		Lus10002034 [exp]	2.4	0.8461
AT1G78950		ATLUP3	Terpenoid cyclases family prot...		Lus10016438 [exp]	3.9	0.8095
AT1G05460		SDE3	SILENCING DEFECTIVE, P-loop co...		Lus10017379 [exp]	6.0	0.7900
AT3G59250			F-box/RNI-like superfamily pro...		Lus10031018 [exp]	6.7	0.7755
AT4G12420		SKU5	Cupredoxin superfamily protein...		Lus10037941 [exp]	7.7	0.7704
AT3G07750			3'-5'-exoribonuclease family p...		Lus10012336 [exp]	9.1	0.8499
AT3G25620		ABCG21	ATP-binding cassette G21, ABC-...		Lus10034387 [exp]	9.8	0.7865
					Lus10014474 [exp]	15.7	0.7791
AT5G58600		TBL44, PMR5	TRICHOME BIREFRINGENCE-LIKE 44...		Lus10031301 [exp]	20.0	0.7807
					Lus10024691 [exp]	20.4	0.7416

Compare expression of checked genes

Lus10003122 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.