Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10140 87 / 1e-23 MADS FLF, AGL25, FLC FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) AT2G03710 85 / 1e-22 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G65060 85 / 2e-22 MADS FCL3, MAF3, AGL70 MADS AFFECTING FLOWERING 3, AGAMOUS-like 70, K-box region and MADS-box transcription factor family protein (.1.2) AT5G65070 84 / 4e-22 MADS FCL4, MAF4, AGL69 MADS AFFECTING FLOWERING 4, AGAMOUS-like 69, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G65050 81 / 5e-21 MADS MAF2, AGL31 MADS AFFECTING FLOWERING 2, AGAMOUS-like 31 (.1.2.3) AT5G15800 81 / 9e-21 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT3G30260 81 / 9e-21 MADS AGL79 AGAMOUS-like 79 (.1) AT5G23260 81 / 1e-20 MADS ABS, TT16, AGL32 TRANSPARENT TESTA16, AGAMOUS-like 32, ARABIDOPSIS BSISTER, K-box region and MADS-box transcription factor family protein (.1.2.3) AT1G24260 81 / 1e-20 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT3G02310 80 / 3e-20 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035029 [exp] 100 / 1e-29 AT5G10140 89 / 7e-24 FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10015766 [exp] 91 / 7e-26 AT5G10140 93 / 4e-25 FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10037039 [exp] 90 / 9e-26 AT5G10140 93 / 2e-25 FLOWERING LOCUS F, FLOWERING LOCUS C, AGAMOUS-like 25, K-box region and MADS-box transcription factor family protein (.1.2.3.4) Lus10041548 [exp] 84 / 2e-23 AT3G61120 92 / 6e-25 AGAMOUS-like 13 (.1) Lus10012545 [exp] 84 / 3e-23 AT3G61120 92 / 1e-24 AGAMOUS-like 13 (.1) Lus10017870 [exp] 86 / 1e-22 AT1G69120 212 / 3e-69 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10011349 [exp] 83 / 1e-22 AT5G15800 125 / 3e-37 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10017871 [exp] 84 / 2e-22 AT1G69120 264 / 2e-90 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) Lus10003125 [exp] 84 / 5e-22 AT1G24260 290 / 9e-101 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G058200 [exp] 88 / 8e-24 AT2G03710 156 / 3e-48 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.003G170200 [exp] 86 / 6e-23 AT5G65050 134 / 8e-40 MADS AFFECTING FLOWERING 2, AGAMOUS-like 31 (.1.2.3) Potri.003G169850 [exp] 86 / 2e-22 AT2G45650 143 / 5e-42 AGAMOUS-like 6 (.1) Potri.001G328600 [exp] 84 / 7e-22 AT5G60910 136 / 1e-39 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.015G098400 [exp] 83 / 7e-22 AT4G22950 136 / 4e-40 AGAMOUS-like 19 (.1) Potri.004G115500 [exp] 81 / 8e-21 AT3G02310 357 / 4e-126 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.008G098400 [exp] 81 / 8e-21 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Potri.002G092300 [exp] 82 / 1e-20 AT1G22130 313 / 1e-105 AGAMOUS-like 104 (.1) Potri.003G169600 [exp] 81 / 1e-20 AT1G24260 359 / 7e-127 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.001G058400 [exp] 81 / 1e-20 AT1G24260 362 / 8e-128 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10003123 pacid=23170008 polypeptide=Lus10003123 locus=Lus10003123.g ID=Lus10003123.BGIv1.0 annot-version=v1.0 ATGGGGAGGAGAAAGGTGGAGCTGAAGCGAATTGAGGACAAGAGCAGCTGTCAAGTAACGTTTTCCAAACGGCGGAAAGGACTGATCAAAAAGGCCGGCG AGATCTCCGTCCTCTGTGACGTCCATCTCGCTCTCGCCGTCTTCTCCCCCGGCGGGCGCCTCTATGACTTCTGCTCCGGCGACAGGTAG
AA sequence Show only first row Show all	>Lus10003123 pacid=23170008 polypeptide=Lus10003123 locus=Lus10003123.g ID=Lus10003123.BGIv1.0 annot-version=v1.0 MGRRKVELKRIEDKSSCQVTFSKRRKGLIKKAGEISVLCDVHLALAVFSPGGRLYDFCSGDR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G10140	MADS	FLF, AGL25, FLC	FLOWERING LOCUS F, FLOWERING L...		Lus10003123 [exp]	0	1
					Lus10011795 [exp]	1.0	0.8444
AT2G42990			GDSL-like Lipase/Acylhydrolase...		Lus10029958 [exp]	4.0	0.8338
AT4G02900			ERD (early-responsive to dehyd...		Lus10000660 [exp]	8.3	0.7678
AT4G23840			Leucine-rich repeat (LRR) fami...		Lus10003886 [exp]	10.5	0.7431
AT3G23450			unknown protein		Lus10023749 [exp]	16.7	0.7110
					Lus10004941 [exp]	18.7	0.6818
					Lus10037765 [exp]	22.0	0.7412
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10008947 [exp]	22.6	0.7365
AT4G18210		ATPUP10	purine permease 10 (.1)		Lus10042835 [exp]	28.5	0.7580
AT3G52740			unknown protein		Lus10022717 [exp]	30.7	0.7208

Compare expression of checked genes

Lus10003123 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.