Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24260 288 / 5e-100 MADS AGL9, SEP3 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) AT5G15800 255 / 6e-87 MADS AGL2, SEP1 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) AT3G02310 250 / 6e-85 MADS AGL4, SEP2 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) AT2G03710 209 / 2e-69 MADS AGL3, SEP4 SEPALLATA 4, AGAMOUS-like 3, K-box region and MADS-box transcription factor family protein (.1.2.3) AT2G45650 188 / 2e-60 MADS AGL6 AGAMOUS-like 6 (.1) AT1G69120 182 / 5e-58 MADS AGL7, AP1 APETALA1, AGAMOUS-like 7, K-box region and MADS-box transcription factor family protein (.1) AT1G26310 181 / 8e-58 MADS CAL1, AGL10, CAL CAULIFLOWER, AGAMOUS-like 10, K-box region and MADS-box transcription factor family protein (.1) AT5G60910 173 / 1e-54 MADS FUL, AGL8 FRUITFULL, AGAMOUS-like 8 (.1.2) AT3G61120 167 / 5e-52 MADS AGL13 AGAMOUS-like 13 (.1) AT4G09960 152 / 2e-46 MADS AGL11, STK SEEDSTICK, AGAMOUS-like 11, K-box region and MADS-box transcription factor family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003124 [exp] 318 / 2e-111 AT1G24260 355 / 6e-125 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10037040 [exp] 304 / 9e-106 AT1G24260 350 / 7e-123 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10015765 [exp] 300 / 2e-104 AT1G24260 347 / 5e-122 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Lus10005080 [exp] 261 / 6e-89 AT3G02310 372 / 1e-131 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10034371 [exp] 255 / 1e-86 AT3G02310 364 / 3e-128 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10034663 [exp] 244 / 4e-82 AT5G15800 267 / 4e-90 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10004638 [exp] 216 / 1e-71 AT3G02310 246 / 2e-82 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Lus10026678 [exp] 213 / 2e-70 AT5G15800 225 / 3e-74 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Lus10011350 [exp] 193 / 7e-63 AT1G24260 234 / 3e-78 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G169600 [exp] 310 / 9e-109 AT1G24260 359 / 7e-127 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.001G058400 [exp] 308 / 1e-107 AT1G24260 362 / 8e-128 SEPALLATA3, AGAMOUS-like 9, K-box region and MADS-box transcription factor family protein (.1.2.3) Potri.004G115500 [exp] 262 / 1e-89 AT3G02310 357 / 4e-126 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.017G099700 [exp] 256 / 2e-87 AT3G02310 372 / 8e-132 SEPALLATA 2, AGAMOUS-like 4, K-box region and MADS-box transcription factor family protein (.1) Potri.008G098400 [exp] 222 / 5e-74 AT5G15800 275 / 2e-93 SEPALLATA1, AGAMOUS-like 2, K-box region and MADS-box transcription factor family protein (.1.2) Potri.014G074100 [exp] 200 / 3e-65 AT2G45650 311 / 5e-108 AGAMOUS-like 6 (.1) Potri.015G134800 [exp] 189 / 1e-60 AT2G45650 209 / 2e-67 AGAMOUS-like 6 (.1) Potri.012G132600 [exp] 177 / 3e-56 AT2G45650 182 / 3e-57 AGAMOUS-like 6 (.1) Potri.012G062300 [exp] 175 / 3e-55 AT5G60910 288 / 5e-99 FRUITFULL, AGAMOUS-like 8 (.1.2) Potri.004G115400 [exp] 174 / 1e-54 AT5G60910 230 / 7e-76 FRUITFULL, AGAMOUS-like 8 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01486 [flax] [poplar] K-box K-box region PF00319 [flax] [poplar] SRF-TF SRF-type transcription factor (DNA-binding and dimerisation domain)
Representative CDS sequence Show only first row Show all	>Lus10003125 pacid=23170006 polypeptide=Lus10003125 locus=Lus10003125.g ID=Lus10003125.BGIv1.0 annot-version=v1.0 ATGGGTAGAGGTAGGGTTGAGCTAAAGAGGATCGAGAACAAAATCAACCGGCAAGTAACGTTTGCAAAGAGAAGGAACGGTCTATTGAAGAAAGCCTACG AGCTTTCAGTCCTTTGCGATGCTGAGGTTGCTCTCATCATCTTCTCCAACCGTGGCAAGCTGTATGAGTTCTGCAGCAGCTCAAGCATGCTGAAGACGCT GGAGAGGTACCAGAAATGCAACTATGGAGCACCAGAGTCCAATGTCTCAGCTAGAGAAGCCCTGGAGATAAGCAGTCAGCAGGAGTATCTGAAGCTTAAA GCTCGCTACGAGGCGCTACAAAGGTCCCAAAGGAACTTGCTGGGAGAAGACCTTGGCCCTCTAAGCACAAAGGAGCTCGAGTCACTCGAAAGGCAGCTCG ACATGTCACTGAAGCAAATCAGATCGACTCGGACCCAATACATGCTGGATCAACTCAATGATCTACAACACAAGGTTACACACCTTATTCCCCCCTTGTA TATTGTGAGGTATCAAACTGGTGGGCTGGTTATTAAGTTGCTGTAG
AA sequence Show only first row Show all	>Lus10003125 pacid=23170006 polypeptide=Lus10003125 locus=Lus10003125.g ID=Lus10003125.BGIv1.0 annot-version=v1.0 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSSSSMLKTLERYQKCNYGAPESNVSAREALEISSQQEYLKLK ARYEALQRSQRNLLGEDLGPLSTKELESLERQLDMSLKQIRSTRTQYMLDQLNDLQHKVTHLIPPLYIVRYQTGGLVIKLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24260	MADS	AGL9, SEP3	SEPALLATA3, AGAMOUS-like 9, K-...		Lus10003125 [exp]	0	1
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10026679 [exp]	5.1	1.0000
AT5G15800	MADS	AGL2, SEP1	SEPALLATA1, AGAMOUS-like 2, K-...		Lus10034663 [exp]	5.4	0.9993
AT4G18960	MADS	AG	AGAMOUS, K-box region and MADS...		Lus10007324 [exp]	6.2	0.9905
AT3G19300			Protein kinase superfamily pro...		Lus10018096 [exp]	7.3	1.0000
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Lus10005080 [exp]	7.5	0.9995
AT5G37660		PDLP7	plasmodesmata-located protein ...		Lus10015952 [exp]	9.0	1.0000
AT4G33800			unknown protein		Lus10006135 [exp]	9.4	0.9799
					Lus10016887 [exp]	10.4	1.0000
AT5G25900		ATKO1, CYP701A3...	CYTOCHROME P450 701 A3, ARABID...		Lus10022898 [exp]	11.0	0.9254
AT1G69120	MADS	AGL7, AP1	APETALA1, AGAMOUS-like 7, K-bo...		Lus10004637 [exp]	11.1	0.9985

Compare expression of checked genes

Lus10003125 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.