Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50570 162 / 3e-47 SBP SPL13, SPL13A SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) AT5G50670 162 / 3e-47 SBP SPL13B SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT1G27370 132 / 7e-36 SBP SPL10 squamosa promoter binding protein-like 10 (.1.2.3.4) AT1G69170 127 / 7e-34 SBP SPL6 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT1G27360 126 / 2e-33 SBP SPL11 squamosa promoter-like 11 (.1.2.3.4) AT1G76580 128 / 6e-33 SBP SPL16 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) AT2G42200 122 / 4e-32 SBP SPL9, AtSPL9 squamosa promoter binding protein-like 9 (.1) AT1G20980 124 / 2e-31 SBP ATSPL14, SPL1R2, FBR6, SPL14 squamosa promoter binding protein-like 14 (.1) AT3G60030 123 / 3e-31 SBP SPL12 squamosa promoter-binding protein-like 12 (.1) AT1G02065 117 / 2e-30 SBP SPL8 squamosa promoter binding protein-like 8 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011348 [exp] 464 / 2e-166 AT5G50670 164 / 3e-48 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10015764 [exp] 221 / 7e-70 AT5G50670 160 / 2e-45 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13B, SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10021141 [exp] 133 / 3e-35 AT1G69170 168 / 9e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10007984 [exp] 131 / 2e-34 AT1G69170 167 / 2e-46 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10021614 [exp] 129 / 4e-34 AT5G43270 192 / 9e-57 squamosa promoter binding protein-like 2 (.1.2.3) Lus10011356 [exp] 127 / 6e-34 AT5G43270 211 / 4e-64 squamosa promoter binding protein-like 2 (.1.2.3) Lus10000643 [exp] 129 / 2e-33 AT1G69170 192 / 4e-55 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Lus10023818 [exp] 125 / 2e-33 AT2G42200 191 / 3e-57 squamosa promoter binding protein-like 9 (.1) Lus10036812 [exp] 127 / 3e-33 AT1G69170 186 / 2e-54 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G058600 [exp] 233 / 1e-74 AT5G50570 164 / 3e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.003G169400 [exp] 213 / 1e-67 AT5G50570 163 / 2e-47 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.012G100700 [exp] 180 / 1e-54 AT5G50570 222 / 6e-70 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.015G098900 [exp] 170 / 4e-50 AT5G50570 233 / 1e-73 SQUAMOSA PROMOTER-BINDING PROTEIN LIKE 13, Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1), Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.2) Potri.008G097900 [exp] 146 / 5e-40 AT1G69170 169 / 2e-47 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.018G149900 [exp] 134 / 6e-36 AT5G43270 187 / 1e-54 squamosa promoter binding protein-like 2 (.1.2.3) Potri.015G060400 [exp] 132 / 1e-34 AT1G69170 153 / 4e-41 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.010G154300 [exp] 128 / 1e-33 AT1G69170 152 / 3e-41 Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein (.1) Potri.002G002400 [exp] 127 / 1e-32 AT1G20980 970 / 0.0 squamosa promoter binding protein-like 14 (.1) Potri.005G258700 [exp] 127 / 2e-32 AT1G20980 966 / 0.0 squamosa promoter binding protein-like 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03110 [flax] [poplar] SBP SBP domain
Representative CDS sequence Show only first row Show all	>Lus10003126 pacid=23169997 polypeptide=Lus10003126 locus=Lus10003126.g ID=Lus10003126.BGIv1.0 annot-version=v1.0 ATGGAATCTTCGTCTCTAGGAGGATCATCAAAGAGAGCCAGGTTGCCAAGTAATGGACTCCAACCCCCAGCTTGCTTGGTCGACGGATGCACTTCAGACC TTACCAAATGTCGAGAGTACCATCGGCGTCATAAGGTCTGTGAGATCCATTCCAAGACCGCCAGAGTTTTCGTCAAAGGTCAAGAACTCCGGTTCTGCCA GCAGTGCAGCAGGTTCCACTCATTGGTAGAGTTCGACGACGGAAAACGGAGCTGCAGAAAGCGGCTGGATGGACACAACAGAAGAAGAAGAAAACCCCAG CCGGTTTCTCTGTCGATGAACTCCGCCAGACTGTTCTCTGATCACCAAGGGACCAGATATTTACAATTTGGCAGCAGCTCACAGACGTTACCAACAACTT CAGCCTGGTCAGCCATGAAGACATTCAAACCAGAGGATGAAGCAATCCTCTACAGAAACGGCGGCGGGGGAGGAAACAACCAATCGACGTTAAATTTCAT AGGAAGCAACATCGGAGGGGGGAAACAGTTCCCTTTCTTACAAACCGATCCTCCTCAAGGCCACAAAATGTTCTCTAATCCGGCCATGGAAGAAGCCGAT CGTGCTCTCTCTCTTCTGTCATCTCCACCACCGGAAATTAGTTTGATGACCAGTAACCACTTGGTCAACCACCACCACCACCCTCCTCCTCAATCTTTAA TCCAGAGTCTGAGCTGCTGCTACAATGGCGGATGTGAAACAATTGATGGCTCTGTTATGAGCAATGGTAGTAGCAATATTAGTCTCCACAGTATGGTTCA GATTGGAGATGCTTCCGCCACTGGTGGTGATAATGGGTCTTCGTCTTGTAGCGCTGGAAGTGGATCTCATCACCATAGTTCCCTTTCTTTCTCCTGGCAG TAG
AA sequence Show only first row Show all	>Lus10003126 pacid=23169997 polypeptide=Lus10003126 locus=Lus10003126.g ID=Lus10003126.BGIv1.0 annot-version=v1.0 MESSSLGGSSKRARLPSNGLQPPACLVDGCTSDLTKCREYHRRHKVCEIHSKTARVFVKGQELRFCQQCSRFHSLVEFDDGKRSCRKRLDGHNRRRRKPQ PVSLSMNSARLFSDHQGTRYLQFGSSSQTLPTTSAWSAMKTFKPEDEAILYRNGGGGGNNQSTLNFIGSNIGGGKQFPFLQTDPPQGHKMFSNPAMEEAD RALSLLSSPPPEISLMTSNHLVNHHHHPPPQSLIQSLSCCYNGGCETIDGSVMSNGSSNISLHSMVQIGDASATGGDNGSSSCSAGSGSHHHSSLSFSWQ

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50670	SBP	SPL13B	SQUAMOSA PROMOTER-BINDING PROT...		Lus10003126 [exp]	0	1
AT4G23060		IQD22	IQ-domain 22 (.1)		Lus10024499 [exp]	6.5	0.8437
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10015292 [exp]	9.9	0.8536
AT1G11600		CYP77B1	"cytochrome P450, family 77, s...		Lus10007660 [exp]	10.1	0.8717
AT5G17510			unknown protein		Lus10024530 [exp]	10.1	0.7942
AT1G68480	C2H2ZnF	JAG	JAGGED, C2H2 and C2HC zinc fin...		Lus10041443 [exp]	18.9	0.8713
AT5G22300		AtNIT4, NIT4	nitrilase 4 (.1)		Lus10021322 [exp]	23.9	0.8397
AT5G07280		EXS, EMS1	EXTRA SPOROGENOUS CELLS, EXCES...		Lus10038875 [exp]	26.5	0.8685
AT2G35640	Trihelix		Homeodomain-like superfamily p...		Lus10040628 [exp]	28.4	0.8640
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10030051 [exp]	31.9	0.7658
AT2G46310	AP2_ERF	CRF5	cytokinin response factor 5 (....		Lus10003037 [exp]	34.9	0.7919

Compare expression of checked genes

Lus10003126 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.