Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24267 122 / 2e-32 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) AT1G24265 120 / 1e-31 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011347 [exp] 268 / 1e-88 AT1G24265 226 / 2e-71 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2), Protein of unknown function (DUF1664) (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G058700 [exp] 153 / 5e-44 AT1G24267 211 / 1e-65 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2) Potri.003G169200 [exp] 150 / 4e-43 AT1G24267 214 / 5e-67 Protein of unknown function (DUF1664) (.1), Protein of unknown function (DUF1664) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07889 [flax] [poplar] DUF1664 Protein of unknown function (DUF1664)
Representative CDS sequence Show only first row Show all	>Lus10003127 pacid=23170009 polypeptide=Lus10003127 locus=Lus10003127.g ID=Lus10003127.BGIv1.0 annot-version=v1.0 ATGGCGCTATCTCTCGGCAAGCTGGTCCTTCTCGGCGGTGCTGGTGTTATTGGCGCTGGCACTGTGTTTGCAAAAGATGTTGGAGTGTTTGATTTGTTTT CTGGAGTTAGCAGGGTTTTGAGGCATTTCAAGTCTGACACTGGATCTGTGAAGCCGCAGAATGATTCCTTGATGGCCCAGGTGAACAGTCTGAGGCAGGA ACTTCAACTGTTGGCGTCAAACAGACCGGTTACAATTATCACTTCAGCAGGAACAGGTGCTAATAAATATTACATAATCATTGTTATCGGAGTAGTGGGC TATGGCTATGTCTGGTGGAAGGGTTGGAAACTCCCTGATATGATGTTCGCAACAAGGCGTACTTTAACTGATGCCTGCAATTCTGTAGGCCAACAACTGG ATTCTGTCTATTCATCTGTTCGGACTGCTAGGAAGGAGTTATCTGCAGATATTTCGAACTTGGATACGAAGCTGAATGAAGTCGGAGAACTTACAGATAG TACACAGGAAATAGTTCTCCAACTACGAGATGGATCAGGAAAAATTAGTAACGAGGTTCGACATGTCCGGGATGTTGTTGTAACTCTGGTTCAGCAAACT CCCCGCCGAGTCGTGGTATCATCCGCTTCTCAGCAGAGTAATGGTATCTCTTTTGGTAATGGAATCTCTGGAGCTGCTGAGCTCACCGGTCCAAGCACCC CGAGTGGTATTTATGTCTCCGAAGAATCCAACTCCGAGTCTTCTTCTTCTTCTTCTTCTTCAAGAACCAACGGCGGCTCCTCAGTTCTGCAGCGACAGTC GTTTCTTTCCAGAACTTTCAGCATCACGAGTTCAATGCTCCAGCGACCCAGTCTGAAGTAG
AA sequence Show only first row Show all	>Lus10003127 pacid=23170009 polypeptide=Lus10003127 locus=Lus10003127.g ID=Lus10003127.BGIv1.0 annot-version=v1.0 MALSLGKLVLLGGAGVIGAGTVFAKDVGVFDLFSGVSRVLRHFKSDTGSVKPQNDSLMAQVNSLRQELQLLASNRPVTIITSAGTGANKYYIIIVIGVVG YGYVWWKGWKLPDMMFATRRTLTDACNSVGQQLDSVYSSVRTARKELSADISNLDTKLNEVGELTDSTQEIVLQLRDGSGKISNEVRHVRDVVVTLVQQT PRRVVVSSASQQSNGISFGNGISGAAELTGPSTPSGIYVSEESNSESSSSSSSSRTNGGSSVLQRQSFLSRTFSITSSMLQRPSLK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24265			Protein of unknown function (D...		Lus10003127 [exp]	0	1
AT3G12640			RNA binding (RRM/RBD/RNP motif...		Lus10015696 [exp]	1.4	0.8998
AT5G63260	C3HZnF		Zinc finger C-x8-C-x5-C-x3-H t...		Lus10019481 [exp]	3.7	0.8746
AT5G66820			unknown protein		Lus10009344 [exp]	3.9	0.8640
AT2G15820		OTP51	ORGANELLE TRANSCRIPT PROCESSIN...		Lus10020996 [exp]	4.2	0.8735
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10012331 [exp]	7.5	0.8704
AT1G76400			Ribophorin I (.1)		Lus10016038 [exp]	9.9	0.8626
AT5G51300			splicing factor-related (.1.2....		Lus10038932 [exp]	11.7	0.8585
AT5G47660	Trihelix		Homeodomain-like superfamily p...		Lus10038779 [exp]	13.7	0.8054
AT4G02720			unknown protein		Lus10022052 [exp]	13.9	0.8495
AT4G38870			F-box and associated interacti...		Lus10003705 [exp]	14.1	0.8565

Compare expression of checked genes

Lus10003127 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.