Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G13080 177 / 1e-57 WRKY ATWRKY75, WRKY75 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) AT3G01970 152 / 6e-48 WRKY ATWRKY45, WRKY45 WRKY DNA-binding protein 45 (.1) AT5G41570 131 / 3e-39 WRKY ATWRKY24, WRKY24 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 24, WRKY DNA-binding protein 24 (.1) AT1G64000 129 / 2e-38 WRKY ATWRKY56, WRKY56 WRKY DNA-binding protein 56 (.1) AT2G46130 122 / 9e-37 WRKY ATWRKY43, WRKY43 WRKY DNA-binding protein 43 (.1.2) AT1G29860 116 / 3e-32 WRKY ATWRKY71, WRKY71 WRKY DNA-binding protein 71 (.1) AT5G49520 114 / 1e-30 WRKY ATWRKY48, WRKY48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) AT4G18170 112 / 2e-30 WRKY ATWRKY28, WRKY28 WRKY DNA-binding protein 28 (.1) AT2G44745 109 / 3e-30 WRKY WRKY12 WRKY family transcription factor (.1) AT2G47260 110 / 9e-30 WRKY ATWRKY23, WRKY23 WRKY DNA-binding protein 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011346 [exp] 229 / 6e-78 AT5G13080 179 / 1e-58 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10012547 [exp] 175 / 3e-57 AT5G13080 172 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10041546 [exp] 168 / 2e-53 AT5G13080 171 / 1e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Lus10007906 [exp] 136 / 1e-40 AT1G64000 168 / 6e-54 WRKY DNA-binding protein 56 (.1) Lus10036401 [exp] 135 / 3e-40 AT1G64000 170 / 1e-54 WRKY DNA-binding protein 56 (.1) Lus10017067 [exp] 116 / 8e-32 AT5G49520 184 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10037785 [exp] 114 / 1e-30 AT5G49520 179 / 4e-53 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Lus10004537 [exp] 112 / 1e-30 AT1G29860 188 / 1e-58 WRKY DNA-binding protein 71 (.1) Lus10004612 [exp] 111 / 5e-30 AT1G29860 188 / 3e-58 WRKY DNA-binding protein 71 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G066860 [exp] 180 / 2e-58 AT5G13080 178 / 1e-57 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.001G058800 [exp] 178 / 5e-58 AT5G13080 171 / 2e-55 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.001G328000 [exp] 178 / 1e-57 AT5G13080 174 / 2e-56 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.003G169100 [exp] 172 / 6e-56 AT5G13080 168 / 2e-54 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.015G099200 [exp] 152 / 1e-47 AT5G13080 154 / 2e-48 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 75, WRKY DNA-binding protein 75 (.1) Potri.002G164900 [exp] 140 / 7e-43 AT2G46130 172 / 6e-56 WRKY DNA-binding protein 43 (.1.2) Potri.014G090700 [exp] 140 / 9e-43 AT2G46130 169 / 2e-54 WRKY DNA-binding protein 43 (.1.2) Potri.002G193000 [exp] 115 / 7e-32 AT2G47260 185 / 3e-56 WRKY DNA-binding protein 23 (.1) Potri.008G103300 [exp] 116 / 1e-31 AT5G49520 170 / 3e-49 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 48, WRKY DNA-binding protein 48 (.1) Potri.014G118200 [exp] 115 / 1e-31 AT2G47260 190 / 5e-58 WRKY DNA-binding protein 23 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [flax] [poplar] WRKY-GCM1 PF03106 [flax] [poplar] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Lus10003128 pacid=23169994 polypeptide=Lus10003128 locus=Lus10003128.g ID=Lus10003128.BGIv1.0 annot-version=v1.0 ATGGAGATGAACTATACGGCGTCGCTTTTCCCTTACTCCTCATCGTCTACCTCCTCATCGATCAATCAAGATCAGGACCAACACCGTGATTACTACGGGC TGACGATGGCGGATGATCGGACGGAGGAGGAAGCTCCACGTGACGGTGGTGATGATGATCTGAAGGGCGAGAATAAGAAGAAGAAGAAGGTGAAGAAGCC CAAGTATGCTTTCCAGACGAGGAGCCAAGTGGATATACTTGATGATGGTTATCGATGGAGGAAGTATGGCCAAAAGGCTGTTAAAAACAACAAGTTCCCC AGAAGCTACTACAGGTGCACGTACCAAGGGTGCAACGTGAAGAAACAAGTGCAACGATTGACAAAGGATGAATCCATGGTGGTGACAACCTACGAAGGAA GCCACTCTCATCCAATCGAGAAGTCCACCGACAACTTCGAGCATATCTTGAACCAGATGCACATCTACGCTTCGTTTTGA
AA sequence Show only first row Show all	>Lus10003128 pacid=23169994 polypeptide=Lus10003128 locus=Lus10003128.g ID=Lus10003128.BGIv1.0 annot-version=v1.0 MEMNYTASLFPYSSSSTSSSINQDQDQHRDYYGLTMADDRTEEEAPRDGGDDDLKGENKKKKKVKKPKYAFQTRSQVDILDDGYRWRKYGQKAVKNNKFP RSYYRCTYQGCNVKKQVQRLTKDESMVVTTYEGSHSHPIEKSTDNFEHILNQMHIYASF

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G13080	WRKY	ATWRKY75, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Lus10003128 [exp]	0	1
AT5G45860		RCAR5, PYL11	regulatory components of ABA r...		Lus10003187 [exp]	1.7	0.9853
AT2G18210			unknown protein		Lus10028324 [exp]	2.0	0.9802
AT5G40010		ASD, AATP1	ATPase-in-Seed-Development, AA...		Lus10014498 [exp]	3.5	0.9758
AT5G62790		PDE129, DXR	PIGMENT-DEFECTIVE EMBRYO 129, ...		Lus10002379 [exp]	3.5	0.9765
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10001210 [exp]	3.9	0.9759
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10011202 [exp]	6.2	0.9563
AT3G51680		AtSDR2	short-chain dehydrogenase/redu...		Lus10021318 [exp]	6.6	0.9704
AT4G34350		HDR, CLB6, ISPH	CHLOROPLAST BIOGENESIS 6, 4-hy...		Lus10040509 [exp]	7.5	0.9769
AT4G39230			NmrA-like negative transcripti...		Lus10040442 [exp]	10.5	0.9564
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10040271 [exp]	11.8	0.9461

Compare expression of checked genes

Lus10003128 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.